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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC172
Library SS
(Link to library)
Clone ID SSC172
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15618-1
Original site URL
Representative seq. ID SSC172P
(Link to Original site)
Representative DNA sequence 
>SSC172 (SSC172Q) /CSM/SS/SSC1-C/SSC172Q.Seq.d/
GTTGATATTTGGAGTATGGGTGTAATTTTATATGCAATGGTAACTGGTCAATTACCATGG
ACATTAACTGATGGTGTTCAAGTTGAAGGTATGGATAGATTGTTAACAGGTGAATTCACA
TATCCATCTCATGTAATTTTAAGTGATGATGTTAAACATTTAATCAATAGAATGATTGTT
GCTGAACCAGTTGAAAGAGCTACTCTTGATGAAATTAAAACTCATGTTTGGGTTAATAAG
GGTTATGATATGGAACCTGATCAAGAATATAATAAAAAAGTTTCTGATXXXXXXXXXXAT
TCCTCACCTGTTATTGTTTCAAGTAATGGTGGTTTAAACAATAATAATCATAACAATATT
TTACATGTTAGTAGTAGTAATATTAATGTTGATGGAGCATCTGCAAGTGCACCTCAATTT
TCATCATCTTCATCGAAAAGAAGATTTAGTTTGGAGGATATTGTCAAAGCAATTACCATT
AGATCTGGAAAAGGAAAGAATCCAAAGATTCGTTCAATGAAAGGACCTTTCAATAGTGGA
ACAACTACAATGTTAAATCCAATTCAATTGATTGAACACATTGAAGAAAATTTAAATTCA
ACTCAAATTTCCTACCGTAGAAACTTTTATGTTTTTGATTGTAAAACTTTGTGTCCAAGA
AATGAAACAATCAATTTCGAAATTGAAGTATGTAAAGTAAATGGTATGGATATGTATGGT
ATTAAATTTAAAAGATTATCTGGTGATGCTTGGTCATATAGTTCTTCTTGTATTAAAATA
GTTGAATCTTTAAAACTTTAACTAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 7.30
Translated Amino Acid sequence 
VDIWSMGVILYAMVTGQLPWTLTDGVQVEGMDRLLTGEFTYPSHVILSDDVKHLINRMIV
AEPVERATLDEIKTHVWVNKGYDMEPDQEYNKKVSD---

---SSPVIVSSNGGLNNNNHNNILHVSSSNINVDGASASAPQFSSSSSKRRFSLEDIVKA
ITIRSGKGKNPKIRSMKGPFNSGTTTMLNPIQLIEHIEENLNSTQISYRRNFYVFDCKTL
CPRNETINFEIEVCKVNGMDMYGIKFKRLSGDAWSYSSSCIKIVESLKL*lkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
VDIWSMGVILYAMVTGQLPWTLTDGVQVEGMDRLLTGEFTYPSHVILSDDVKHLINRMIV
AEPVERATLDEIKTHVWVNKGYDMEPDQEYNKKVSD---

---iphlllfqvmvv*tiiiitifymlvvvilmlmehlqvhlnfhhlhrkedlvwrilsk
qlpldlekeriqrfvq*kdlsiveqlqc*iqfn*lntlkki*iqlkfptvetfmflivkl
cvqemkqsisklkyvk*mvwicmvlnlkdylvmlghivllvlk*lnl*nfn*kkkkkkk

Frame B:
lifgvwv*fymqw*lvnyhgh*lmvfklkvwidc*qvnshihlm*f*vmmlni*sie*ll
lnqlkelllmklklmfglirvmiwnlikniikkfl---

---fltcycfk*wwfkq**s*qyftc****y*c*wsickctsifiifiekki*fggycqs
nyh*iwkrkeskdsfnertfq*wnnynvksnsid*th*rkfkfnsnflp*kllcf*l*nf
vskk*nnqfrn*sm*skwygyvwy*i*kiiw*clvi*ffly*ns*ifktltkkkkkkkk

Frame C:
*yleygcnficngnwsitmdin*wcss*ryg*ivnr*ihisiscnfk**c*tfnq*ndcc
*ts*ksys**n*nsclg**gl*ygt*sri**ksf*---

---SSPVIVSSNGGLNNNNHNNILHVSSSNINVDGASASAPQFSSSSSKRRFSLEDIVKA
ITIRSGKGKNPKIRSMKGPFNSGTTTMLNPIQLIEHIEENLNSTQISYRRNFYVFDCKTL
CPRNETINFEIEVCKVNGMDMYGIKFKRLSGDAWSYSSSCIKIVESLKL*lkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC172 (SSC172Q) /CSM/SS/SSC1-C/SSC172Q.Seq.d/                       1532   0.0
SSI251 (SSI251Q) /CSM/SS/SSI2-C/SSI251Q.Seq.d/                       1001   0.0
AFO481 (AFO481Q) /CSM/AF/AFO4-D/AFO481Q.Seq.d/                        950   0.0
AFI727 (AFI727Q) /CSM/AF/AFI7-B/AFI727Q.Seq.d/                        757   0.0
CHO563 (CHO563Q) /CSM/CH/CHO5-C/CHO563Q.Seq.d/                        601   e-171
SLE575 (SLE575Q) /CSM/SL/SLE5-D/SLE575Q.Seq.d/                        583   e-165
SSH860 (SSH860Q) /CSM/SS/SSH8-C/SSH860Q.Seq.d/                        466   e-130
SLH695 (SLH695Q) /CSM/SL/SLH6-D/SLH695Q.Seq.d/                         74   4e-12
VFO342 (VFO342Q) /CSM/VF/VFO3-B/VFO342Q.Seq.d/                         44   0.003
VFJ795 (VFJ795Q) /CSM/VF/VFJ7-D/VFJ795Q.Seq.d/                         44   0.003
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34  1e-04  11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40  0.002  7
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    40  0.011  12
AZ526468|AZ526468.1 255PbG09 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    52  0.011  1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36  0.016  11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          36  0.018  9
AC005504|AC005504.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    38  0.024  7
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    40  0.083  6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36  0.096  9
BH148496|BH148496.1 ENTQO90TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34  0.11  3
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MV2) RecName: Full=Probable serine/threonine-protein kinase ...   244   2e-63
AE016820_426(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    72   2e-11
BX908811_19(BX908811|pid:none) Neurospora crassa DNA linkage gro...    72   2e-11
AM270165_97(AM270165|pid:none) Aspergillus niger contig An08c010...    72   3e-11
(Q54DF2) RecName: Full=Probable serine/threonine-protein kinase ...    72   3e-11
BC075868_1(BC075868|pid:none) Danio rerio SNF related kinase, mR...    71   5e-11
CU633895_369(CU633895|pid:none) Podospora anserina genomic DNA c...    71   5e-11
BC168505_1(BC168505|pid:none) Danio rerio SNF related kinase, mR...    71   5e-11
CR380948_76(CR380948|pid:none) Candida glabrata strain CBS138 ch...    71   5e-11
BC124153_1(BC124153|pid:none) Danio rerio MAP/microtubule affini...    70   1e-10
protein update 2009. 6. 9
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSC172 is cyt
5' end seq. ID SSC172F
5' end seq. 
>SSC172F.Seq
GTTGATATTTGGAGTATGGGTGTAATTTTATATGCAATGGTAACTGGTCAATTACCATGG
ACATTAACTGATGGTGTTCAAGTTGAAGGTATGGATAGATTGTTAACAGGTGAATTCACA
TATCCATCTCATGTAATTTTAAGTGATGATGTTAAACATTTAATCAATAGAATGATTGTT
GCTGAACCAGTTGAAAGAGCTACTCTTGATGAAATTAAAACTCATGTTTGGGTTAATAAG
GGTTATGATATGGAACCTGATCAAGAATATAATAAAAAAGTTTCTGAT----------
Length of 5' end seq. 288
3' end seq. ID SSC172Z
3' end seq. 
>SSC172Z.Seq
----------ATTCCTCACCTGTTATTGTTTCAAGTAATGGTGGTTTAAACAATAATAAT
CATAACAATATTTTACATGTTAGTAGTAGTAATATTAATGTTGATGGAGCATCTGCAAGT
GCACCTCAATTTTCATCATCTTCATCGAAAAGAAGATTTAGTTTGGAGGATATTGTCAAA
GCAATTACCATTAGATCTGGAAAAGGAAAGAATCCAAAGATTCGTTCAATGAAAGGACCT
TTCAATAGTGGAACAACTACAATGTTAAATCCAATTCAATTGATTGAACACATTGAAGAA
AATTTAAATTCAACTCAAATTTCCTACCGTAGAAACTTTTATGTTTTTGATTGTAAAACT
TTGTGTCCAAGAAATGAAACAATCAATTTCGAAATTGAAGTATGTAAAGTAAATGGTATG
GATATGTATGGTATTAAATTTAAAAGATTATCTGGTGATGCTTGGTCATATAGTTCTTCT
TGTATTAAAATAGTTGAATCTTTAAAACTTTAACTAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 529
Connected seq. ID SSC172P
Connected seq. 
>SSC172P.Seq
GTTGATATTTGGAGTATGGGTGTAATTTTATATGCAATGGTAACTGGTCAATTACCATGG
ACATTAACTGATGGTGTTCAAGTTGAAGGTATGGATAGATTGTTAACAGGTGAATTCACA
TATCCATCTCATGTAATTTTAAGTGATGATGTTAAACATTTAATCAATAGAATGATTGTT
GCTGAACCAGTTGAAAGAGCTACTCTTGATGAAATTAAAACTCATGTTTGGGTTAATAAG
GGTTATGATATGGAACCTGATCAAGAATATAATAAAAAAGTTTCTGAT----------AT
TCCTCACCTGTTATTGTTTCAAGTAATGGTGGTTTAAACAATAATAATCATAACAATATT
TTACATGTTAGTAGTAGTAATATTAATGTTGATGGAGCATCTGCAAGTGCACCTCAATTT
TCATCATCTTCATCGAAAAGAAGATTTAGTTTGGAGGATATTGTCAAAGCAATTACCATT
AGATCTGGAAAAGGAAAGAATCCAAAGATTCGTTCAATGAAAGGACCTTTCAATAGTGGA
ACAACTACAATGTTAAATCCAATTCAATTGATTGAACACATTGAAGAAAATTTAAATTCA
ACTCAAATTTCCTACCGTAGAAACTTTTATGTTTTTGATTGTAAAACTTTGTGTCCAAGA
AATGAAACAATCAATTTCGAAATTGAAGTATGTAAAGTAAATGGTATGGATATGTATGGT
ATTAAATTTAAAAGATTATCTGGTGATGCTTGGTCATATAGTTCTTCTTGTATTAAAATA
GTTGAATCTTTAAAACTTTAACTAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 817
Full length Seq ID -
Full length Seq. -
Length of full length seq. -