>SSC170 (SSC170Q) /CSM/SS/SSC1-C/SSC170Q.Seq.d/
XXXXXXXXXXAATTTGGTATTCCTGCTTTATTAAGAGCTGGTGGTGGTACTATAATCAAT
ACTGCAAGTTTTGTTGCAATAATGGGTGCTGCAACTCCACAAATTGCATACACTGCAAGT
AAAGGTGGTGTTTTAGCAATGACTAGAGAATTAGCAATTATTCATGCAAGACAAAATATT
AGAGTAAATGCACTTTGTCCAGGCCCATTAAGAACTGAATTATTGGATAAATTCTTAAAT
ACCCCAGAAAAGAGAAATCGTCGTTTAGTTCATCTTCCAATGGGTAGATTTGGTTTGGCA
AATGAAATCGCAAATGGTGCTTTGTTCCTTGCAAGTGATGAGTCATCTTACGTAACAGCT
TCAACATTTTTAGTTGATGGTGGTTTAACTGCATCATATGTTACTCCACTTTTAAAAAAA
ATAATAATAAAAAAAATAAATAAGGGTTTATTGACTCATTTAATATGTAAAAAATAAAAA
ATAAAATTTTGGAATGATTTTATTTAGATCTTTTTTTTAAAGAATTATTTTAATAATAAA
AAAAAA

---FGIPALLRAGGGTIINTASFVAIMGAATPQIAYTASKGGVLAMTRELAIIHARQNIR
VNALCPGPLRTELLDKFLNTPEKRNRRLVHLPMGRFGLANEIANGALFLASDESSYVTAS
TFLVDGGLTASYVTPLLKKIIIKKINKGLLTHLICKK*kikfwndfi*ifflknyfnnkk
k

Frame A:
---iwyscfikswwwyynqyckfccnngccnstncihck*rwcfsnd*risnyscktky*
skctlsrpikn*iig*ilkyprkekssfssssng*iwfgk*nrkwcfvpck**vilrnsf
nifs*wwfnciicystfkknnnkknk*gfidsfnm*kiknkile*fyldlffkelf***k
k


Frame B:
---FGIPALLRAGGGTIINTASFVAIMGAATPQIAYTASKGGVLAMTRELAIIHARQNIR
VNALCPGPLRTELLDKFLNTPEKRNRRLVHLPMGRFGLANEIANGALFLASDESSYVTAS
TFLVDGGLTASYVTPLLKKIIIKKINKGLLTHLICKK*kikfwndfi*ifflknyfnnkk
k


Frame C:
---lvflly*elvvvl*silqvllq*wvlqlhklhtlqvkvvf*q*len*qlfmqdkile
*mhfvqah*elnywins*ipqkreivv*fifqwvdlvwqmksqmvlcslqvmshlt*qlq
hf*lmvv*lhhmllhf*kk***kk*irvy*li*yvknkk*nfgmilfrsff*riiliikk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF642 (VSF642Q) /CSM/VS/VSF6-B/VSF642Q.Seq.d/                        797   0.0
SSM267 (SSM267Q) /CSM/SS/SSM2-C/SSM267Q.Seq.d/                        797   0.0
SSC170 (SSC170Q) /CSM/SS/SSC1-C/SSC170Q.Seq.d/                        797   0.0
SSB188 (SSB188Q) /CSM/SS/SSB1-D/SSB188Q.Seq.d/                        797   0.0
SSA843 (SSA843Q) /CSM/SS/SSA8-B/SSA843Q.Seq.d/                        797   0.0
SSL674 (SSL674Q) /CSM/SS/SSL6-D/SSL674Q.Seq.d/                        791   0.0
SSE523 (SSE523Q) /CSM/SS/SSE5-A/SSE523Q.Seq.d/                        791   0.0
SSD735 (SSD735Q) /CSM/SS/SSD7-B/SSD735Q.Seq.d/                        632   e-180
SSI752 (SSI752Q) /CSM/SS/SSI7-C/SSI752Q.Seq.d/                        472   e-132
SSH790 (SSH790Q) /CSM/SS/SSH7-D/SSH790Q.Seq.d/                        442   e-123

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG931743|BG931743.1 h112-182 h112 S. mansoni adult mini-library, Fietto/DeMarco/Verjovski-Almeida Schistosoma mansoni cDNA, mRNA sequence.    36  0.73  2
AW017307|AW017307.1 EST272729 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAU76 5' end, mRNA sequence.    36  1.0  2
AC101955|AC101955.4 Mus musculus clone RP24-165J6, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44  1.8  1
BV047363|BV047363.1 S212P6596FC3.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    44  1.8  1
AV845837|AV845837.1 Ciona intestinalis cDNA, clone:rciad13m03, 3' end, single read.    44  1.8  1
AP000986|AP000986.1 Sulfolobus tokodaii genomic DNA, complete sequence, section:6/10.    34  2.6  6
AC102343|AC102343.2 Mus musculus clone RP23-254H18, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  6.9  1
AF265483|AF265483.1 Barbosella cucullata trnK gene, intron sequence; and maturase-like protein (matK) gene, complete sequence; chloroplast genes for chloroplast products.    42  6.9  1
AF265482|AF265482.1 Restrepiella ophiocephala trnK gene, intron sequence; and maturase (matK) gene, complete cds; chloroplast genes for chloroplast products.    42  6.9  1
AF265469|AF265469.1 Pleurothallis saurocephala trnK gene, intron sequence; and maturase (matK) gene, complete cds; chloroplast genes for chloroplast products.    42  6.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001344_1735(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...   193   2e-48
AE017342_36(AE017342|pid:none) Cryptococcus neoformans var. neof...   178   9e-44
CP000509_2539(CP000509|pid:none) Nocardioides sp. JS614, complet...   170   2e-41
AP009152_97(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, co...   165   6e-40
AM420293_5235(AM420293|pid:none) Saccharopolyspora erythraea NRR...   165   8e-40
CP000480_2512(CP000480|pid:none) Mycobacterium smegmatis str. MC...   165   8e-40
BA000030_6734(BA000030|pid:none) Streptomyces avermitilis MA-468...   164   1e-39
CP000479_3589(CP000479|pid:none) Mycobacterium avium 104, comple...   162   7e-39
AE016958_2928(AE016958|pid:none) Mycobacterium avium subsp. para...   162   7e-39
CP000384_2046(CP000384|pid:none) Mycobacterium sp. MCS, complete...   160   3e-38

 psg: 0.95  gvh: 0.49  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.12
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SSC170 is mit

>SSC170Z.Seq
----------AATTTGGTATTCCTGCTTTATTAAGAGCTGGTGGTGGTACTATAATCAAT
ACTGCAAGTTTTGTTGCAATAATGGGTGCTGCAACTCCACAAATTGCATACACTGCAAGT
AAAGGTGGTGTTTTAGCAATGACTAGAGAATTAGCAATTATTCATGCAAGACAAAATATT
AGAGTAAATGCACTTTGTCCAGGCCCATTAAGAACTGAATTATTGGATAAATTCTTAAAT
ACCCCAGAAAAGAGAAATCGTCGTTTAGTTCATCTTCCAATGGGTAGATTTGGTTTGGCA
AATGAAATCGCAAATGGTGCTTTGTTCCTTGCAAGTGATGAGTCATCTTACGTAACAGCT
TCAACATTTTTAGTTGATGGTGGTTTAACTGCATCATATGTTACTCCACTTTTAAAAAAA
ATAATAATAAAAAAAATAAATAAGGGTTTATTGACTCATTTAATATGTAAAAAATAAAAA
ATAAAATTTTGGAATGATTTTATTTAGATCTTTTTTTTAAAGAATTATTTTAATAATAAA
AAAAAA