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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC166
Library SS
(Link to library)
Clone ID SSC166
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10142-1
Original site URL
Representative seq. ID SSC166P
(Link to Original site)
Representative DNA sequence 
>SSC166 (SSC166Q) /CSM/SS/SSC1-C/SSC166Q.Seq.d/
AATTATTAGATAATGGTATAAATGTTAATGATTTATTATGGATTGATCCAGAGTTTAATG
TTGGTGATATTGGTAAAAAATGGCGTACAGTTTCAAGTAATACAACAGTAGCATTATTTA
CAAAGTTTTTAAATGCTTGTAAATCATTTGATTATGAAAATTGTCAAATCGATTTTAATT
TAAATCATTTAATACCAGCTGATACTTGCAAATTATCAGAGATAGCTGATCCATTACAAT
GGGTAACTAATACATTAATTCAAGATAAAAAAGTACCAATTATTAAAGGTTTAGTAAATC
AAGTTTCTAAAATAAATGAAAATAATAATAATTGGTCAGTTTCAATTAAATCATCAAATA
ATGATGATGATGATGATGATAATAAAATAATTAATATTATTAGTGAAAATGTAGTATTAA
CAATTGGTGCTGAACCATTAACAATTTTAAATGAAAGTAAACAACAACAACAACAACAAC
AACAAAAAGAATTAATTACAGTTGAACAAGTTGTAAATCCAGAAGAATTAAAAAAAGTTT
GTAAAAAGGATGATGTTGTTGCAGTTTATGGTAGTTCTCATACTGCAATCATTGCATTGT
ATAATATTGXXXXXXXXXXAGATTATCAATTTCTATAGATCACCATTAAAGTATGCAGAA
TATTATGATGATTGGATTTTGTATGATAATACTGGTTTAAAAGGTTATTCTGCTGAATGG
GCAAAAGAACATTTGGAAAAGAATCCTACAAATTTAATTGAAAGAATTCAAGTTGATAAT
AAAGAATTGCTTGAAAATAAATTATCAAATTGTACAAAAGTAGTCTATGCAATTGGTTTT
GAAAGAAGAGGTTCAGTTAATATTAAATTAAATGAAAATCAAGATTGGATAAACTCTTCA
AATTTAAAATACAATGAATCAAATGGTATAATATCAAATCATGGTTTATTTGGTATTGGT
ATTGCTTTTCCTCAATTTAAACCTGATCGTGTTGGTAATTTAGAATATAATGTTGGTTTA
TGGAAATTTATGGTTTATTTAGATCAAGTTTTACCACTTTGGTTAAATAAAAATAAAAAT
TAAAAATAAAAATTTAATAATAACAATAAAAATAAAATAAAATCTTAAATCATAATAAAA
AAAAAAAAAA
sequence update 1998. 7.30
Translated Amino Acid sequence 
LLDNGINVNDLLWIDPEFNVGDIGKKWRTVSSNTTVALFTKFLNACKSFDYENCQIDFNL
NHLIPADTCKLSEIADPLQWVTNTLIQDKKVPIIKGLVNQVSKINENNNNWSVSIKSSNN
DDDDDDNKIINIISENVVLTIGAEPLTILNESKQQQQQQQQKELITVEQVVNPEELKKVC
KKDDVVAVYGSSHTAIIALYNI---

---IINFYRSPLKYAEYYDDWILYDNTGLKGYSAEWAKEHLEKNPTNLIERIQVDNKELL
ENKLSNCTKVVYAIGFERRGSVNIKLNENQDWINSSNLKYNESNGIISNHGLFGIGIAFP
QFKPDRVGNLEYNVGLWKFMVYLDQVLPLWLNKNKN*k*kfnnnnknkiks*iiikkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ny*imv*mlmiyygliqslmlvilvkngvqfqviqq*hylqsf*mlvnhlimkivksili
*ii*yqlilanyqr*lihyng*lih*fkikkyqllkv**ikflk*mkiiiigqfqlnhqi
mmmmmmiik*lillvkm*y*qlvlnh*qf*mkvnnnnnnnnkkn*lqlnkl*iqkn*kkf
vkrmmllqfmvvlilqslhciil---

---rlsisidhh*smqnimmigfcmiilv*kvillngqkniwkrilqi*lkefkliiknc
lkinyqivqk*smqlvlkeevqliln*mkikig*tlqi*ntmnqmv*yqimvylvlvllf
lnlnlivlvi*nimlvygnlwfi*ikfyhfg*ikikiknknliitikik*nlks**kkkk

Frame B:
iir*wykc**fimd*srv*cw*yw*kmaysfk*ynssiiykvfkcl*ii*l*klsnrf*f
ksfnts*ylqiirds*sitmgn*yinsr*kstny*rfskssf*nk*k***lvsfn*iik*
********nn*yy**kcsinnwc*tinnfk*k*ttttttttkrinys*tscksrrikksl
*kg*cccslw*fsycnhciv*y---

---dyqfl*itikvcril**ldfv**ywfkrlfc*mgkrtfgkesykfn*knss***ria
*k*iiklyksslcnwf*kkrfs*y*ik*ksrldklfkfkiq*ikwynikswfiwywycfs
si*t*scw*fri*cwfmeiyglfrssfttlvk*k*klkiki***q*k*nkilnhnkkkk

Frame C:
LLDNGINVNDLLWIDPEFNVGDIGKKWRTVSSNTTVALFTKFLNACKSFDYENCQIDFNL
NHLIPADTCKLSEIADPLQWVTNTLIQDKKVPIIKGLVNQVSKINENNNNWSVSIKSSNN
DDDDDDNKIINIISENVVLTIGAEPLTILNESKQQQQQQQQKELITVEQVVNPEELKKVC
KKDDVVAVYGSSHTAIIALYNI---

---IINFYRSPLKYAEYYDDWILYDNTGLKGYSAEWAKEHLEKNPTNLIERIQVDNKELL
ENKLSNCTKVVYAIGFERRGSVNIKLNENQDWINSSNLKYNESNGIISNHGLFGIGIAFP
QFKPDRVGNLEYNVGLWKFMVYLDQVLPLWLNKNKN*k*kfnnnnknkiks*iiikkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC166 (SSC166Q) /CSM/SS/SSC1-C/SSC166Q.Seq.d/                       1045   0.0
VSB278 (VSB278Q) /CSM/VS/VSB2-D/VSB278Q.Seq.d/                        880   0.0
VFD144 (VFD144Q) /CSM/VF/VFD1-B/VFD144Q.Seq.d/                        880   0.0
VSD301 (VSD301Q) /CSM/VS/VSD3-A/VSD301Q.Seq.d/                        872   0.0
VFG810 (VFG810Q) /CSM/VF/VFG8-A/VFG810Q.Seq.d/                        872   0.0
SFB389 (SFB389Q) /CSM/SF/SFB3-D/SFB389Q.Seq.d/                        854   0.0
VFB348 (VFB348Q) /CSM/VF/VFB3-B/VFB348Q.Seq.d/                        825   0.0
VFN549 (VFN549Q) /CSM/VF/VFN5-C/VFN549Q.Seq.d/                        799   0.0
VSH680 (VSH680Q) /CSM/VS/VSH6-D/VSH680Q.Seq.d/                        795   0.0
VFK224 (VFK224Q) /CSM/VF/VFK2-A/VFK224Q.Seq.d/                        690   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   880  0.0  11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42  1e-06  10
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38  2e-04  10
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    38  2e-04  10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  4e-04  12
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    40  6e-04  10
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34  0.002  11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36  0.003  13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  0.003  10
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    44  0.005  11
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000479_1625(CP000479|pid:none) Mycobacterium avium 104, comple...   146   4e-55
CP000854_3684(CP000854|pid:none) Mycobacterium marinum M, comple...   120   1e-49
CP000325_3032(CP000325|pid:none) Mycobacterium ulcerans Agy99, c...   119   1e-48
CU458896_665(CU458896|pid:none) Mycobacterium abscessus chromoso...   115   7e-48
CP000480_532(CP000480|pid:none) Mycobacterium smegmatis str. MC2...   115   1e-46
CP001020_995(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com...   111   5e-41
AE017354_2855(AE017354|pid:none) Legionella pneumophila subsp. p...   131   4e-29
CR628337_2859(CR628337|pid:none) Legionella pneumophila str. Len...   130   1e-28
CP000608_1071(CP000608|pid:none) Francisella tularensis subsp. t...   114   5e-24
CP000915_360(CP000915|pid:none) Francisella tularensis subsp. me...   114   6e-24
protein update 2009. 1.27
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSC166 is cyt
5' end seq. ID SSC166F
5' end seq. 
>SSC166F.Seq
AATTATTAGATAATGGTATAAATGTTAATGATTTATTATGGATTGATCCAGAGTTTAATG
TTGGTGATATTGGTAAAAAATGGCGTACAGTTTCAAGTAATACAACAGTAGCATTATTTA
CAAAGTTTTTAAATGCTTGTAAATCATTTGATTATGAAAATTGTCAAATCGATTTTAATT
TAAATCATTTAATACCAGCTGATACTTGCAAATTATCAGAGATAGCTGATCCATTACAAT
GGGTAACTAATACATTAATTCAAGATAAAAAAGTACCAATTATTAAAGGTTTAGTAAATC
AAGTTTCTAAAATAAATGAAAATAATAATAATTGGTCAGTTTCAATTAAATCATCAAATA
ATGATGATGATGATGATGATAATAAAATAATTAATATTATTAGTGAAAATGTAGTATTAA
CAATTGGTGCTGAACCATTAACAATTTTAAATGAAAGTAAACAACAACAACAACAACAAC
AACAAAAAGAATTAATTACAGTTGAACAAGTTGTAAATCCAGAAGAATTAAAAAAAGTTT
GTAAAAAGGATGATGTTGTTGCAGTTTATGGTAGTTCTCATACTGCAATCATTGCATTGT
ATAATATTG----------
Length of 5' end seq. 609
3' end seq. ID SSC166Z
3' end seq. 
>SSC166Z.Seq
----------AGATTATCAATTTCTATAGATCACCATTAAAGTATGCAGAATATTATGAT
GATTGGATTTTGTATGATAATACTGGTTTAAAAGGTTATTCTGCTGAATGGGCAAAAGAA
CATTTGGAAAAGAATCCTACAAATTTAATTGAAAGAATTCAAGTTGATAATAAAGAATTG
CTTGAAAATAAATTATCAAATTGTACAAAAGTAGTCTATGCAATTGGTTTTGAAAGAAGA
GGTTCAGTTAATATTAAATTAAATGAAAATCAAGATTGGATAAACTCTTCAAATTTAAAA
TACAATGAATCAAATGGTATAATATCAAATCATGGTTTATTTGGTATTGGTATTGCTTTT
CCTCAATTTAAACCTGATCGTGTTGGTAATTTAGAATATAATGTTGGTTTATGGAAATTT
ATGGTTTATTTAGATCAAGTTTTACCACTTTGGTTAAATAAAAATAAAAATTAAAAATAA
AAATTTAATAATAACAATAAAAATAAAATAAAATCTTAAATCATAATAAAAAAAAAAAAA
A
Length of 3' end seq. 531
Connected seq. ID SSC166P
Connected seq. 
>SSC166P.Seq
AATTATTAGATAATGGTATAAATGTTAATGATTTATTATGGATTGATCCAGAGTTTAATG
TTGGTGATATTGGTAAAAAATGGCGTACAGTTTCAAGTAATACAACAGTAGCATTATTTA
CAAAGTTTTTAAATGCTTGTAAATCATTTGATTATGAAAATTGTCAAATCGATTTTAATT
TAAATCATTTAATACCAGCTGATACTTGCAAATTATCAGAGATAGCTGATCCATTACAAT
GGGTAACTAATACATTAATTCAAGATAAAAAAGTACCAATTATTAAAGGTTTAGTAAATC
AAGTTTCTAAAATAAATGAAAATAATAATAATTGGTCAGTTTCAATTAAATCATCAAATA
ATGATGATGATGATGATGATAATAAAATAATTAATATTATTAGTGAAAATGTAGTATTAA
CAATTGGTGCTGAACCATTAACAATTTTAAATGAAAGTAAACAACAACAACAACAACAAC
AACAAAAAGAATTAATTACAGTTGAACAAGTTGTAAATCCAGAAGAATTAAAAAAAGTTT
GTAAAAAGGATGATGTTGTTGCAGTTTATGGTAGTTCTCATACTGCAATCATTGCATTGT
ATAATATTG----------AGATTATCAATTTCTATAGATCACCATTAAAGTATGCAGAA
TATTATGATGATTGGATTTTGTATGATAATACTGGTTTAAAAGGTTATTCTGCTGAATGG
GCAAAAGAACATTTGGAAAAGAATCCTACAAATTTAATTGAAAGAATTCAAGTTGATAAT
AAAGAATTGCTTGAAAATAAATTATCAAATTGTACAAAAGTAGTCTATGCAATTGGTTTT
GAAAGAAGAGGTTCAGTTAATATTAAATTAAATGAAAATCAAGATTGGATAAACTCTTCA
AATTTAAAATACAATGAATCAAATGGTATAATATCAAATCATGGTTTATTTGGTATTGGT
ATTGCTTTTCCTCAATTTAAACCTGATCGTGTTGGTAATTTAGAATATAATGTTGGTTTA
TGGAAATTTATGGTTTATTTAGATCAAGTTTTACCACTTTGGTTAAATAAAAATAAAAAT
TAAAAATAAAAATTTAATAATAACAATAAAAATAAAATAAAATCTTAAATCATAATAAAA
AAAAAAAAAA
Length of connected seq. 1140
Full length Seq ID -
Full length Seq. -
Length of full length seq. -