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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC160
Library SS
(Link to library)
Clone ID SSC160
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16228-1
Original site URL
Representative seq. ID SSC160E
(Link to Original site)
Representative DNA sequence 
>SSC160 (SSC160Q) /CSM/SS/SSC1-C/SSC160Q.Seq.d/
GTAAATAACAAATTTTATTTGTATTTCAAAAAAATAATAATTAAAAAAAAAAAAAAATAA
AAAAAAAAAAACTAAAAAATGGTTGCCACAGATTTAAAAAATAATAAAAACATTGCAATT
TTAGGCAGTGGAAATTTAGGAGTTTCAATTGCAAGAGGTATTGTTGCCTCTGGACATTAT
AAATCCAATCAAATTGTTTTAACTCGTAGAACATTGGAGAAAATCCAACATTTAAAAGAT
GAAGAAGGATTTCAAATTACATCAGATAATTTGGAAGCTGCTAATAAATGTGCAATTTTA
ATTATTGGTGTATTACCAGCACAAGTTCCACAATTATTAGAATCAATTAAACATTTGGTT
ACCAAGGATCATATTATCATTTCAGTTGTATTAGGTATTACAATCAGTGGTATTAGATCC
CATCTTCAACCAGATGTCTACACACCAATAGTAAGAGCCATGCCAAATACCGCAATTCAA
AATCCATGACATGTATTGCCAACAAGAGTGACCATCCAACTAAATCAGGTACTGCTGAAC
AAGAATTAGCCGATCAAAATGCATTGGAAGTCACTGAAAAGATATTCAATTGTTGTGGTG
AATGCATTACAATCTCTGAGGAAGCAATGGTATCTGCACCAGCTTTATGCTCATGTGGTA
CTGCTTTCTTTTGCAGAATTATTCGTGCTGCTGCAAGTGCAGGTTGCGAAATTGGATTCA
TTCCACGCTGAGGATGCTGTTAGAATTGCCGCCCAAACTGCCAAAGGTGCTGCCATCATG
TTATTGAAAAATGATAGTCATCCAGAATCTGAAATTGATCGTATTACCACTCCAAGTGGT
GCCACCATTGCCGGTTTAAATACTATGGAACATAATGGTTTATCAAGTGCTATCATTAAA
GGTATTGTAATGTCTGCTGAAAAATCTTCAAAAAGTCAAGCTGCATTAAACAAATTAAAT
AATGTTTCAAGTTAAAAAATTATATTTCTTCTTTCCTTTTATTATTTTTATTTT
sequence update 1999. 3. 9
Translated Amino Acid sequence 
vnnkfylyfkkiiikkkkk*kkkn*kmvatdlknnkniailgsgnlgvsiargivasghy
ksnqivltrrtlekiqhlkdeegfqitsdnleaankcailiigvlpaqvpqllesikhlv
tkdhiiisvvlgitisgirshlqpdvytpivrampntaiqnp*hvlptrvtiqlnqvlln
kn*PIKMHWKSLKRYSIVVVNALQSLRKQWYLHQLYAHVVLLSFAELFVLLQVQVAKLDS
FHAEDAVRIAAQTAKGAAIMLLKNDSHPESEIDRITTPSGATIAGLNTMEHNGLSSAIIK
GIVMSAEKSSKSQAALNKLNNVSS*kiifllsfyyfyf
Translated Amino Acid sequence (All Frames) 
Frame A:
vnnkfylyfkkiiikkkkk*kkkn*kmvatdlknnkniailgsgnlgvsiargivasghy
ksnqivltrrtlekiqhlkdeegfqitsdnleaankcailiigvlpaqvpqllesikhlv
tkdhiiisvvlgitisgirshlqpdvytpivrampntaiqnp*hvlptrvtiqlnqvlln
kn*PIKMHWKSLKRYSIVVVNALQSLRKQWYLHQLYAHVVLLSFAELFVLLQVQVAKLDS
FHAEDAVRIAAQTAKGAAIMLLKNDSHPESEIDRITTPSGATIAGLNTMEHNGLSSAIIK
GIVMSAEKSSKSQAALNKLNNVSS*kiifllsfyyfyf


Frame B:
*itnficiskk**lkkkknkkkktkkwlpqi*kiiktlqf*avei*efqlqevllpldii
npiklf*lvehwrksni*kmkkdfklhqiiwkllinvqf*llvyyqhkfhny*nqlniwl
priilsfqly*vlqsvvldpifnqmsthq**epcqipqfkihdmycqqe*psn*iryc*t
risrskcigsh*kdiqllw*mhynl*gsngictsfmlmwycfllqnysccckcrlrnwih
stlrmllelppklpkvlpscy*kmiviqnlklivlplqvvpplpv*ilwnimvyqvlslk
vl*cllknlqkvklh*tn*imfqvkklyfffpfiifi


Frame C:
k*qilfvfqknnn*kkkkikkkklkngchrfkk**khcnfrqwkfrsfnckrycclwtl*
iqsncfns*nigenptfkr*rrisnyir*fgsc**mcnfnywcitstsstiirin*tfgy
qgsyyhfsciryynqwy*ipsstrclhtnskshakyrnsksmtcianksdhptksgtaeq
eladqnalevtekifnccgecitiseeamvsapalcscgtaffcriiraaasagceigfi
pr*gcc*ncrpncqrcchhviek**ssri*n*syyhskwchhcrfkyygt*wfikcyh*r
ycnvc*kifkksscikqik*cfklknyissflllflf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC160 (SSC160Q) /CSM/SS/SSC1-C/SSC160Q.Seq.d/                       1853   0.0
VHP477 (VHP477Q) /CSM/VH/VHP4-D/VHP477Q.Seq.d/                       1556   0.0
VFN356 (VFN356Q) /CSM/VF/VFN3-C/VFN356Q.Seq.d/                       1253   0.0
VFK243 (VFK243Q) /CSM/VF/VFK2-B/VFK243Q.Seq.d/                       1227   0.0
VFO670 (VFO670Q) /CSM/VF/VFO6-C/VFO670Q.Seq.d/                       1185   0.0
VFH593 (VFH593Q) /CSM/VF/VFH5-D/VFH593Q.Seq.d/                       1160   0.0
VSJ175 (VSJ175Q) /CSM/VS/VSJ1-D/VSJ175Q.Seq.d/                       1140   0.0
VFJ433 (VFJ433Q) /CSM/VF/VFJ4-B/VFJ433Q.Seq.d/                       1074   0.0
VSD684 (VSD684Q) /CSM/VS/VSD6-D/VSD684Q.Seq.d/                       1009   0.0
VFM784 (VFM784Q) /CSM/VF/VFM7-D/VFM784Q.Seq.d/                       1009   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    36  0.002  10
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    46  0.005  6
AE015937|AE015937.1 Clostridium tetani E88, section 2 of 10 of the complete genome.    34  0.010  12
AC087579|AC087579.17 Homo sapiens chromosome 8 clone RP11-429B7 map 8, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    52  0.014  1
AC135615|AC135615.1 Homo sapiens clone CTD-2560N10, LOW-PASS SEQUENCE SAMPLING.    52  0.014  1
BQ632011|BQ632011.1 il21c02.x1 HR85 islet Homo sapiens cDNA clone IMAGE:6030698 3', mRNA sequence.    52  0.014  1
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36  0.014  7
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34  0.021  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36  0.025  8
AZ531810|AZ531810.1 ENTCB87TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  0.027  2
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55E34) RecName: Full=Pyrroline-5-carboxylate reductase 2;     ...   394   e-108
CU207366_2079(CU207366|pid:none) Gramella forsetii KT0803 comple...   154   5e-36
CP000685_838(CP000685|pid:none) Flavobacterium johnsoniae UW101,...   127   5e-28
AM398681_66(AM398681|pid:none) Flavobacterium psychrophilum JIP0...   126   1e-27
CP000140_2186(CP000140|pid:none) Parabacteroides distasonis ATCC...   124   5e-27
AP006841_530(AP006841|pid:none) Bacteroides fragilis YCH46 DNA, ...   120   8e-26
AE015928_3755(AE015928|pid:none) Bacteroides thetaiotaomicron VP...   120   1e-25
CP001175_2211(CP001175|pid:none) Listeria monocytogenes HCC23, c...   115   2e-24
FM242711_394(FM242711|pid:none) Listeria monocytogenes Clip81459...   113   9e-24
AM263198_344(AM263198|pid:none) Listeria welshimeri serovar 6b s...   112   2e-23
protein update 2009. 7. 6
PSORT 

 psg: 0.87  gvh: 0.58  alm: 0.27  top: 0.50  tms: 0.07  mit: 0.41  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.42  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 12.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSC160 is end
5' end seq. ID SSC160F
5' end seq. 
>SSC160F.Seq
GTAAATAACAAATTTTATTTGTATTTCAAAAAAATAATAATTAAAAAAAAAAAAAAATAA
AAAAAAAAAAACTAAAAAATGGTTGCCACAGATTTAAAAAATAATAAAAACATTGCAATT
TTAGGCAGTGGAAATTTAGGAGTTTCAATTGCAAGAGGTATTGTTGCCTCTGGACATTAT
AAATCCAATCAAATTGTTTTAACTCGTAGAACATTGGAGAAAATCCAACATTTAAAAGAT
GAAGAAGGATTTCAAATTACATCAGATAATTTGGAAGCTGCTAATAAATGTGCAATTTTA
ATTATTGGTGTATTACCAGCACAAGTTCCACAATTATTAGAATCAATTAAACATTTGGTT
ACCAAGGATCATATTATCATTTCAGTTGTATTAGGTATTACAATCAGTGGTATTAGATCC
CATCTTCAACCAGATGTCTACACACCAATAGTAAGAGCCATGCCAAATACCGCAATTCAA
TATTGTGAATCCATGACATGTATTGCCAACAAGAGTGACCATCCAACTAAATCAGGTACT
GCTGAACAAGAATTAGCCGATCAAAATGCATTGGAAGTCACTGAAAAGATATTCAATTGT
TGTGGTGAATGCATTACAATCTCTGAGGAAGCAATGGTATCTGCACCAGCTTTATGCTCA
TGTGGTACTGCTTTCTTTTGCAGAATTATTCGTGCTGCTGCAAGTGCAGGTTGCGAAATT
GGATTC----------
Length of 5' end seq. 726
3' end seq. ID SSC160Z
3' end seq. 
>SSC160Z.Seq
----------AATCCATGACATGTATTGCCAACAAGAGTGACCATCCAACTAAATCAGGT
ACTGCTGAACAAGAATTAGCCGATCAAAATGCATTGGAAGTCACTGAAAAGATATTCAAT
TGTTGTGGTGAATGCATTACAATCTCTGAGGAAGCAATGGTATCTGCACCAGCTTTATGC
TCATGTGGTACTGCTTTCTTTTGCAGAATTATTCGTGCTGCTGCAAGTGCAGGTTGCGAA
ATTGGATTCCACGCTGAGGATGCTGTTAGAATTGCCGCCCAAACTGCCAAAGGTGCTGCC
ATCATGTTATTGAAAAATGATAGTCATCCAGAATCTGAAATTGATCGTATTACCACTCCA
AGTGGTGCCACCATTGCCGGTTTAAATACTATGGAACATAATGGTTTATCAAGTGCTATC
ATTAAAGGTATTGTAATGTCTGCTGAAAAATCTTCAAAAAGTCAAGCTGCATTAAACAAA
TTAAATAATGTTTCAAGTTAAAAAATTATATTTCTTCTTTCCTTTTATTATTTTTATTTT
TTCCCAAA
Length of 3' end seq. 538
Connected seq. ID SSC160P
Connected seq. 
>SSC160P.Seq
GTAAATAACAAATTTTATTTGTATTTCAAAAAAATAATAATTAAAAAAAAAAAAAAATAA
AAAAAAAAAAACTAAAAAATGGTTGCCACAGATTTAAAAAATAATAAAAACATTGCAATT
TTAGGCAGTGGAAATTTAGGAGTTTCAATTGCAAGAGGTATTGTTGCCTCTGGACATTAT
AAATCCAATCAAATTGTTTTAACTCGTAGAACATTGGAGAAAATCCAACATTTAAAAGAT
GAAGAAGGATTTCAAATTACATCAGATAATTTGGAAGCTGCTAATAAATGTGCAATTTTA
ATTATTGGTGTATTACCAGCACAAGTTCCACAATTATTAGAATCAATTAAACATTTGGTT
ACCAAGGATCATATTATCATTTCAGTTGTATTAGGTATTACAATCAGTGGTATTAGATCC
CATCTTCAACCAGATGTCTACACACCAATAGTAAGAGCCATGCCAAATACCGCAATTCAA
TATTGTGAATCCATGACATGTATTGCCAACAAGAGTGACCATCCAACTAAATCAGGTACT
GCTGAACAAGAATTAGCCGATCAAAATGCATTGGAAGTCACTGAAAAGATATTCAATTGT
TGTGGTGAATGCATTACAATCTCTGAGGAAGCAATGGTATCTGCACCAGCTTTATGCTCA
TGTGGTACTGCTTTCTTTTGCAGAATTATTCGTGCTGCTGCAAGTGCAGGTTGCGAAATT
GGATTC----------AATCCATGACATGTATTGCCAACAAGAGTGACCATCCAACTAAA
TCAGGTACTGCTGAACAAGAATTAGCCGATCAAAATGCATTGGAAGTCACTGAAAAGATA
TTCAATTGTTGTGGTGAATGCATTACAATCTCTGAGGAAGCAATGGTATCTGCACCAGCT
TTATGCTCATGTGGTACTGCTTTCTTTTGCAGAATTATTCGTGCTGCTGCAAGTGCAGGT
TGCGAAATTGGATTCCACGCTGAGGATGCTGTTAGAATTGCCGCCCAAACTGCCAAAGGT
GCTGCCATCATGTTATTGAAAAATGATAGTCATCCAGAATCTGAAATTGATCGTATTACC
ACTCCAAGTGGTGCCACCATTGCCGGTTTAAATACTATGGAACATAATGGTTTATCAAGT
GCTATCATTAAAGGTATTGTAATGTCTGCTGAAAAATCTTCAAAAAGTCAAGCTGCATTA
AACAAATTAAATAATGTTTCAAGTTAAAAAATTATATTTCTTCTTTCCTTTTATTATTTT
TATTTTTTCCCAAA
Length of connected seq. 1264
Full length Seq ID SSC160E
Full length Seq. 
>SSC160E.Seq
GTAAATAACAAATTTTATTTGTATTTCAAAAAAATAATAATTAAAAAAAAAAAAAAATAA
AAAAAAAAAAACTAAAAAATGGTTGCCACAGATTTAAAAAATAATAAAAACATTGCAATT
TTAGGCAGTGGAAATTTAGGAGTTTCAATTGCAAGAGGTATTGTTGCCTCTGGACATTAT
AAATCCAATCAAATTGTTTTAACTCGTAGAACATTGGAGAAAATCCAACATTTAAAAGAT
GAAGAAGGATTTCAAATTACATCAGATAATTTGGAAGCTGCTAATAAATGTGCAATTTTA
ATTATTGGTGTATTACCAGCACAAGTTCCACAATTATTAGAATCAATTAAACATTTGGTT
ACCAAGGATCATATTATCATTTCAGTTGTATTAGGTATTACAATCAGTGGTATTAGATCC
CATCTTCAACCAGATGTCTACACACCAATAGTAAGAGCCATGCCAAATACCGCAATTCAA
AATCCATGACATGTATTGCCAACAAGAGTGACCATCCAACTAAATCAGGTACTGCTGAAC
AAGAATTAGCCGATCAAAATGCATTGGAAGTCACTGAAAAGATATTCAATTGTTGTGGTG
AATGCATTACAATCTCTGAGGAAGCAATGGTATCTGCACCAGCTTTATGCTCATGTGGTA
CTGCTTTCTTTTGCAGAATTATTCGTGCTGCTGCAAGTGCAGGTTGCGAAATTGGATTCA
TTCCACGCTGAGGATGCTGTTAGAATTGCCGCCCAAACTGCCAAAGGTGCTGCCATCATG
TTATTGAAAAATGATAGTCATCCAGAATCTGAAATTGATCGTATTACCACTCCAAGTGGT
GCCACCATTGCCGGTTTAAATACTATGGAACATAATGGTTTATCAAGTGCTATCATTAAA
GGTATTGTAATGTCTGCTGAAAAATCTTCAAAAAGTCAAGCTGCATTAAACAAATTAAAT
AATGTTTCAAGTTAAAAAATTATATTTCTTCTTTCCTTTTATTATTTTTATTTT
Length of full length seq. 1014