>SSC157 (SSC157Q) /CSM/SS/SSC1-C/SSC157Q.Seq.d/
XXXXXXXXXXGTCAAAATCATATCTTTATATTGGGTGATACAAATTCTGGTACCGATGCT
TTTTCAAATATGGGTTTATTCTATGACTATCAAACACTTGCAAAGGATAAAGCAGTTCTT
AAAGATTCCTCTAAATCTTTAGTTACTTGGGATCACCATTTGTTTGATAAAACATTAGAT
TCTTCAAAATCTCTTAAAGGTTTACCAAGTGGTGTCATTGTTTATGCATATAGCAATCCA
AGCTCAACATGTTATTTAATTTGGGTAAACTCTACAAACTTTAAAACTGATGAAGATACA
ACCCCGATTGAAATCGAATTGGATGCAGATTTCGCTTCTGTTTACAACTATCAAAATATA
AAACAAACCATCTCATCAAGTAATAATAAAGTTAAACTCACTATTGATTCAACTCCACAA
TTCGTTTACTTGGATTATCAAGGTCCTGATTCTGGTGCAAACCCAAGTAATTCTCCAATT
ATTAATTTTGGTTTCAATTTAATAATTTTGATTATATTTATAAATTTTATTTTCTTTATT
TAAA

---QNHIFILGDTNSGTDAFSNMGLFYDYQTLAKDKAVLKDSSKSLVTWDHHLFDKTLDS
SKSLKGLPSGVIVYAYSNPSSTCYLIWVNSTNFKTDEDTTPIEIELDADFASVYNYQNIK
QTISSSNNKVKLTIDSTPQFVYLDYQGPDSGANPSNSPIINFGFNLIILIIFINFIFFI*

Frame A:
---sksylyig*ykfwyrcffkygfil*lsntckg*sss*rfl*ifsylgspfv**nirf
fkis*rftkwchclci*qsklnmlfnlgklykl*n**rynpd*nrigcrfrfclqlskyk
tnhlik***s*thy*fnstirllglsrs*fwckpk*fsny*fwfqfnnfdyiykfyflyl


Frame B:
---QNHIFILGDTNSGTDAFSNMGLFYDYQTLAKDKAVLKDSSKSLVTWDHHLFDKTLDS
SKSLKGLPSGVIVYAYSNPSSTCYLIWVNSTNFKTDEDTTPIEIELDADFASVYNYQNIK
QTISSSNNKVKLTIDSTPQFVYLDYQGPDSGANPSNSPIINFGFNLIILIIFINFIFFI*


Frame C:
---kiislywviqilvpmlfqiwvysmtikhlqrikqflkiplnl*llgiticlikh*il
qnllkvyqvvslfmhiaiqaqhvi*fg*tlqtlklmkiqprlksnwmqisllfttiki*n
kpshqviiklnslliqlhnsftwiikvlilvqtqvilqllilvsi**f*lyl*ilfslfk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC157 (SSC157Q) /CSM/SS/SSC1-C/SSC157Q.Seq.d/                        932   0.0
SSK243 (SSK243Q) /CSM/SS/SSK2-B/SSK243Q.Seq.d/                        924   0.0
VFL266 (VFL266Q) /CSM/VF/VFL2-C/VFL266Q.Seq.d/                        902   0.0
VFA767 (VFA767Q) /CSM/VF/VFA7-C/VFA767Q.Seq.d/                        882   0.0
VFM317 (VFM317Q) /CSM/VF/VFM3-A/VFM317Q.Seq.d/                        858   0.0
SSK377 (SSK377Q) /CSM/SS/SSK3-D/SSK377Q.Seq.d/                         82   1e-14
VSG542 (VSG542Q) /CSM/VS/VSG5-B/VSG542Q.Seq.d/                         36   0.53
CFA640 (CFA640Q) /CSM/CF/CFA6-B/CFA640Q.Seq.d/                         36   0.53
AHQ414 (AHQ414Q) /CSM/AH/AHQ4-A/AHQ414Q.Seq.d/                         36   0.53
AHE510 (AHE510Q) /CSM/AH/AHE5-A/AHE510Q.Seq.d/                         36   0.53

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   924  0.0  1
AL445674|AL445674.12 Human DNA sequence from clone RP11-477L5 on chromosome 9.    46  0.56  2
AC098947|AC098947.8 Rattus norvegicus clone CH230-59A8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  1.7  5
CC130111|CC130111.1 NDL.35K9.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.35K9, DNA sequence.    44  1.7  1
AG170794|AG170794.1 Pan troglodytes DNA, clone: RP43-039O01.TJ.    38  4.7  2
BZ989959|BZ989959.1 PUGGM12TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa379A23, DNA sequence.    38  5.6  2
M94266|M94266.1 Bovine ephemeral fever virus structural (G) and nonstructural (GNS) glycoprotein genes, complete cds.    36  5.9  2
AC123272|AC123272.3 Rattus norvegicus clone CH230-308E15, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    42  6.7  2
AC125630|AC125630.4 Rattus norvegicus clone CH230-9P18, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  6.9  1
AC126085|AC126085.4 Rattus norvegicus clone CH230-145O4, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  6.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM746676_7156(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    40   0.039
(Q4A159) RecName: Full=Sensor protein kinase walK;          EC=2...    35   1.2
CR940348_722(CR940348|pid:none) Theileria annulata strain Ankara...    35   1.2
EF070959_1(EF070959|pid:none) Salmonella enterica subsp. enteric...    35   1.2
CU633457_203(CU633457|pid:none) Podospora anserina genomic DNA c...    33   3.6
AE006641_1985(AE006641|pid:none) Sulfolobus solfataricus P2, com...    33   4.7
CP001336_746(CP001336|pid:none) Desulfitobacterium hafniense DCB...    33   4.7
(P40912) RecName: Full=Invertase;          EC=3.2.1.26; AltName:...    33   4.7
CU179680_38(CU179680|pid:none) Mycoplasma agalactiae PG2 chromos...    33   6.2
EF579956_1(EF579956|pid:none) Plutella xylostella aminopeptidase...    33   6.2

 psg: 0.75  gvh: 0.47  alm: 0.18  top: 0.73  tms: 0.07  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSC157 is cyt

>SSC157Z.Seq
----------GTCAAAATCATATCTTTATATTGGGTGATACAAATTCTGGTACCGATGCT
TTTTCAAATATGGGTTTATTCTATGACTATCAAACACTTGCAAAGGATAAAGCAGTTCTT
AAAGATTCCTCTAAATCTTTAGTTACTTGGGATCACCATTTGTTTGATAAAACATTAGAT
TCTTCAAAATCTCTTAAAGGTTTACCAAGTGGTGTCATTGTTTATGCATATAGCAATCCA
AGCTCAACATGTTATTTAATTTGGGTAAACTCTACAAACTTTAAAACTGATGAAGATACA
ACCCCGATTGAAATCGAATTGGATGCAGATTTCGCTTCTGTTTACAACTATCAAAATATA
AAACAAACCATCTCATCAAGTAATAATAAAGTTAAACTCACTATTGATTCAACTCCACAA
TTCGTTTACTTGGATTATCAAGGTCCTGATTCTGGTGCAAACCCAAGTAATTCTCCAATT
ATTAATTTTGGTTTCAATTTAATAATTTTGATTATATTTATAAATTTTATTTTCTTTATT
TAAA