>SSC141 (SSC141Q) /CSM/SS/SSC1-B/SSC141Q.Seq.d/
XXXXXXXXXXACCAGCAGGTAGAATTGTATTTGGTTTATATGGAAAGACAGTACCAAAAA
CAGTTGAAAACTTTAGAGCATTATGTACTGGTGAAAAAGGTTTAGGTACCAGTGGTAAAC
CATTACATTATAAAGATAGTAAATTCCATCGTATCATTCCAAACTTTATGATTCAAGGTG
GTGATTTCACAAGAGGTGATGGTACTGGTGGTGAATCAATTTATGGTAAAAAATTCAATG
ATGAAAACTTCAAAATTAAACACTCCAAACCAGGTCTTTTATCAATGGTAACGCTGGTCC
AAACACTAATGGTTCACAATTCTTTATTACTACCGTTGTTACTTCATGGTTAGATGGTCG
TCATACTGTTTTTGGTGAAGTTATTGAAGGTATGGATATTGTTAAACTCCTTGAATCCAT
TGGTTCCCAATCTGGAACACCAAGTAAAATTGCTAAAATCTCAAACTCTGGTGAATTATA
AATAAAATAAAACAAAACAAAATAAAATAAATTTCCAAGGAAATAAATAAATAATATAAA
A

---PAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGG
DFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMVTLVQTLMVHNSLLLPLLLHG*mvv
ilflvkllkvwillnslnplvpnlehqvkllksqtlvnyk*nktkqnkinfqgnk*ii*

Frame A:
---PAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGG
DFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMVTLVQTLMVHNSLLLPLLLHG*mvv
ilflvkllkvwillnslnplvpnlehqvkllksqtlvnyk*nktkqnkinfqgnk*ii*


Frame B:
---qqvelylvymerqyqkqlktlehyvlvkkv*vpvvnhyiikivnsivsfqtl*fkvv
isqevmvlvvnqfmvknsmmktsklntpnqvfyqw*rwskh*wftilyyyrcyfmvrwss
ycfw*sy*rygyc*tp*ihwfpiwntk*nc*nlklw*iinkikqnkik*iskeink*yk


Frame C:
---sr*nciwfiwkdstkns*kl*simyw*krfryqw*titl*r**ipsyhsklydsrw*
fhkr*wyww*inlw*kiq**klqn*tlqtrsfingnagpntngsqffittvvtswldgrh
tvfgeviegmdivkllesigsqsgtpskiakisnsgel*ik*nktk*nkfprk*innik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC141 (SSC141Q) /CSM/SS/SSC1-B/SSC141Q.Seq.d/                        924   0.0
VSE240 (VSE240Q) /CSM/VS/VSE2-B/VSE240Q.Seq.d/                        910   0.0
SSF406 (SSF406Q) /CSM/SS/SSF4-A/SSF406Q.Seq.d/                        910   0.0
SSD482 (SSD482Q) /CSM/SS/SSD4-D/SSD482Q.Seq.d/                        910   0.0
CHB890 (CHB890Q) /CSM/CH/CHB8-D/CHB890Q.Seq.d/                        103   3e-21
VSE657 (VSE657Q) /CSM/VS/VSE6-C/VSE657Q.Seq.d/                         82   1e-14
VSJ592 (VSJ592Q) /CSM/VS/VSJ5-D/VSJ592Q.Seq.d/                         74   2e-12
VSJ435 (VSJ435Q) /CSM/VS/VSJ4-B/VSJ435Q.Seq.d/                         74   2e-12
VSG181 (VSG181Q) /CSM/VS/VSG1-D/VSG181Q.Seq.d/                         74   2e-12
VSF758 (VSF758Q) /CSM/VS/VSF7-C/VSF758Q.Seq.d/                         74   2e-12

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF123597|AF123597.1 Dictyostelium discoideum cyclophilin B (cypB) mRNA, complete cds.   551  0.0  2
AF053068|AF053068.1 Dictyostelium discoideum cyclophilin B (CypB) gene, complete cds.   428  0.0  5
U17900|U17900.1 Orpinomyces sp. PC-2 cyclophilin B precursor (cypB) mRNA, complete cds.    98  5e-45  4
AF121347|AF121347.1 Dictyostelium discoideum cyclophilin D (cypD) mRNA, nuclear gene encoding mitochondrial protein, complete cds.    62  1e-39  6
BG893608|BG893608.1 kt11g12.y2 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:CYP5_CAEEL P52013 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 ;, mRNA sequence.    70  2e-34  5
BG227035|BG227035.1 kp95h04.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F31C3.1 CE17730 CYP-5: CYCLOPHILLIN ;, mRNA sequence.    86  3e-34  3
CA758835|CYPH_SCHPO Peptidyl-prolyl cis-trans isomerase (PP, mRNA sequence.    68  1e-26  4
AW496549|AW496549.1 kp01g10.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:F31C3.1 CE17730 CYP-5: CYCLOPHILLIN ;, mRNA sequence.    84  2e-26  3
BE581710|BE581710.1 kq51a12.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F31C3.1 CE17730 CYP-5: CYCLOPHILLIN ;, mRNA sequence.    86  6e-24  3
AX536868|AX536868.1 Sequence 469 from Patent WO02064766.          58  1e-19  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ377540_1(FJ377540|pid:none) Camellia oleifera cyclophilin mRNA...   136   3e-53
FB823095_1(FB823095|pid:none) Sequence 42368 from Patent WO20080...   135   9e-53
AY543004_1(AY543004|pid:none) Bigelowiella natans cyclophilin mR...   132   2e-52
EF145287_1(EF145287|pid:none) Populus trichocarpa clone WS01122_...   139   5e-52
EF495223_1(EF495223|pid:none) Nicotiana tabacum cyclophilin-like...   133   8e-52
(Q8LDP4) RecName: Full=Peptidyl-prolyl cis-trans isomerase CYP19...   135   1e-51
AF020433_1(AF020433|pid:none) Arabidopsis thaliana cyclophilin (...   135   1e-51
CP001328_206(CP001328|pid:none) Micromonas sp. RCC299 chromosome...   125   4e-51
AF542973_1(AF542973|pid:none) Triticum aestivum cyclophilin mRNA...   136   8e-51
EU964862_1(EU964862|pid:none) Zea mays clone 282162 peptidyl-pro...   137   8e-51

 psg: 0.80  gvh: 0.37  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSC141 is cyt

>SSC141Z.Seq
----------ACCAGCAGGTAGAATTGTATTTGGTTTATATGGAAAGACAGTACCAAAAA
CAGTTGAAAACTTTAGAGCATTATGTACTGGTGAAAAAGGTTTAGGTACCAGTGGTAAAC
CATTACATTATAAAGATAGTAAATTCCATCGTATCATTCCAAACTTTATGATTCAAGGTG
GTGATTTCACAAGAGGTGATGGTACTGGTGGTGAATCAATTTATGGTAAAAAATTCAATG
ATGAAAACTTCAAAATTAAACACTCCAAACCAGGTCTTTTATCAATGGTAACGCTGGTCC
AAACACTAATGGTTCACAATTCTTTATTACTACCGTTGTTACTTCATGGTTAGATGGTCG
TCATACTGTTTTTGGTGAAGTTATTGAAGGTATGGATATTGTTAAACTCCTTGAATCCAT
TGGTTCCCAATCTGGAACACCAAGTAAAATTGCTAAAATCTCAAACTCTGGTGAATTATA
AATAAAATAAAACAAAACAAAATAAAATAAATTTCCAAGGAAATAAATAAATAATATAAA
A