SSC136
Library SS
(Link to library)
Clone ID SSC136
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SSC136Z
(Link to Original site)
Representative DNA sequence
>SSC136 (SSC136Q) /CSM/SS/SSC1-B/SSC136Q.Seq.d/
XXXXXXXXXXGAAGAAATAATGGAAGAATTGGATAATGCCTGNGATTATATGAAGGGTTT
TGAACAACAATGTAAACAAATGGTTCAAGATTATGTCCCAGAATTAATTGAAATCATGTC
CACTACTGAAGACCCTAATAAAGTTTGTTCCCAAATTTCCTTATGTCCAAATGCCCTATC
TTCTAAAAATGAATCAAAAAATCAAAGACTTATAAAAAAAAACATAATCAATTAATAAAT
TATTAATTTCTAATTTCTGAAACAAGTTTTTATTATTATTAAAAAAAAAAAAAAAAAAAA
AACATTAAAACTTCACATAAACAAAGTTAATTATAAAATAAAAATATTTTTTAAAAATTG
ATTTTTAATTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997.10. 5
Translated Amino Acid sequence
---EIMEELDNAXDYMKGFEQQCKQMVQDYVPELIEIMSTTEDPNKVCSQISLCPNALSS
KNESKNQRLIKKNIIN**iinf*flkqvfiiikkkkkkktlklhinkvnykikiffkn*f
lillkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---kk*wknwimpxii*rvlnnnvnkwfkimsqn*lkscpllktlikfvpkfpyvqmpyl
lkmnqkikdl*kkt*sinkllisnf*nkfllllkkkkkkkh*nft*tkliik*kyflkid
f*fy*kkkkkkkkk


Frame B:
---rnngrig*clxlyegf*ttm*tngsrlcprin*nhvhy*rp**slfpnflmskcpif
*k*ikksktykkkhnqliny*flisetsfyyy*kkkkkkniktshkqs*l*nknif*kli
fnfikkkkkkkkkk


Frame C:
---EIMEELDNAXDYMKGFEQQCKQMVQDYVPELIEIMSTTEDPNKVCSQISLCPNALSS
KNESKNQRLIKKNIIN**iinf*flkqvfiiikkkkkkktlklhinkvnykikiffkn*f
lillkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC136 (SSC136Q) /CSM/SS/SSC1-B/SSC136Q.Seq.d/ 476 e-133
SSL531 (SSL531Q) /CSM/SS/SSL5-B/SSL531Q.Seq.d/ 444 e-124
SSF545 (SSF545Q) /CSM/SS/SSF5-B/SSF545Q.Seq.d/ 444 e-124
SSF304 (SSF304Q) /CSM/SS/SSF3-A/SSF304Q.Seq.d/ 444 e-124
SSE760 (SSE760Q) /CSM/SS/SSE7-C/SSE760Q.Seq.d/ 444 e-124
SSE160 (SSE160Q) /CSM/SS/SSE1-C/SSE160Q.Seq.d/ 444 e-124
SSC184 (SSC184Q) /CSM/SS/SSC1-D/SSC184Q.Seq.d/ 444 e-124
SSJ335 (SSJ335Q) /CSM/SS/SSJ3-B/SSJ335Q.Seq.d/ 428 e-119
SSH652 (SSH652Q) /CSM/SS/SSH6-C/SSH652Q.Seq.d/ 414 e-115
SSA866 (SSA866Q) /CSM/SS/SSA8-C/SSA866Q.Seq.d/ 414 e-115

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 0.021 7
AP005178|AP005178.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06. 44 0.034 2
AC116101|AC116101.2 Dictyostelium discoideum chromosome 2 map complement(427476-387492) strain AX4, complete sequence. 38 0.068 4
AC144344|AC144344.4 Medicago truncatula clone mth2-8c18, WORKING DRAFT SEQUENCE, 10 unordered pieces. 32 0.18 6
AL928842|AL928842.13 Zebrafish DNA sequence from clone CH211-279E11 in linkage group 17. 34 0.19 6
AP003945|AP003945.1 Oryza sativa genomic DNA, chromosome 7, BAC clone:OJ1134_A07, WORKING DRAFT SEQUENCE, 1 ordered pieces. 44 0.21 3
BH001574|BH001574.1 BMBAC01E11T7_PSU Brugia malayi Genomic Bac Library 1 & 2 Brugia malayi genomic, DNA sequence. 46 0.33 1
CC246672|CC246672.1 CH261-126P5_RM1.1 CH261 Gallus gallus genomic clone CH261-126P5, DNA sequence. 46 0.33 1
CC082505|CC082505.1 CSU-K33r.9H14.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.9H14, DNA sequence. 46 0.33 1
L01625|L01625.1 Brugia malayi mRNA sequence. 46 0.33 1
dna update 2003. 7.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P10960) RecName: Full=Sulfated glycoprotein 1; Short=S... 48 1e-04
BC061759_1(BC061759|pid:none) Rattus norvegicus prosaposin, mRNA... 48 1e-04
AK167719_1(AK167719|pid:none) Mus musculus 15 days pregnant adul... 47 3e-04
(Q61207) RecName: Full=Sulfated glycoprotein 1; Short=S... 47 3e-04
U57999_1(U57999|pid:none) Mus musculus prosaposin (psap\SGP-1) g... 47 3e-04
AK167073_1(AK167073|pid:none) Mus musculus blastocyst blastocyst... 47 3e-04
AK159722_1(AK159722|pid:none) Mus musculus osteoclast-like cell ... 47 3e-04
AK153404_1(AK153404|pid:none) Mus musculus bone marrow macrophag... 47 3e-04
AK088369_1(AK088369|pid:none) Mus musculus 2 days neonate thymus... 47 3e-04
AK149785_1(AK149785|pid:none) Mus musculus bone marrow macrophag... 47 3e-04
protein update 2009. 6. 9
PSORT

psg: 0.75 gvh: 0.58 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for SSC136 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC136Z
3' end seq.
>SSC136Z.Seq
----------GAAGAAATAATGGAAGAATTGGATAATGCCTGNGATTATATGAAGGGTTT
TGAACAACAATGTAAACAAATGGTTCAAGATTATGTCCCAGAATTAATTGAAATCATGTC
CACTACTGAAGACCCTAATAAAGTTTGTTCCCAAATTTCCTTATGTCCAAATGCCCTATC
TTCTAAAAATGAATCAAAAAATCAAAGACTTATAAAAAAAAACATAATCAATTAATAAAT
TATTAATTTCTAATTTCTGAAACAAGTTTTTATTATTATTAAAAAAAAAAAAAAAAAAAA
AACATTAAAACTTCACATAAACAAAGTTAATTATAAAATAAAAATATTTTTTAAAAATTG
ATTTTTAATTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 396
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -