>SSC133 (SSC133Q) /CSM/SS/SSC1-B/SSC133Q.Seq.d/
AAATAATTTCTTTTTTTTTAAAAAAAATAAACAAAAAAAGCTACAAAAAAAAATGACAAA
AGTTGGAGGATTAGGTGCTACTCATCAAGCTGATAAAACAGTTGAAGATATTGTAAATGC
TGTTAAACCTTCAATTCAAAGTAAACTTGGAACCAATATTTCTAATCTAAAGGTTATTAG
CTACAAAACTCAACTTGTAAATGGTACAAATTATTTTGTTAAAGTAAGAACTGAAAATGG
TTATGCTCATCTTAGAATTTATAAACCATTTTCTGGTGCTGCTTCTTTAGTTTCAGTTCA
AGATGGTAAAGCAAAAGATGATGAAATTACTTATTTTTAATCACTTTTATTCAATTTTAT
TGTAATAAAAAAATATACAAAAAAAAAGAAAACAAATAAATAAATAAAAAAATAAATAAA
TAAAAGTATATGTATATAATAAAATTTCTCCTTAAAAAAAAAAAAAAAAAAAAA

NNFFFFKKNKQKKLQKKMTKVGGLGATHQADKTVEDIVNAVKPSIQSKLGTNISNLKVIS
YKTQLVNGTNYFVKVRTENGYAHLRIYKPFSGAASLVSVQDGKAKDDEITYF*sllfnfi
vikkytkkkktnk*ikk*inksici**nfslkkkkkk

Frame A:
k*flff*kk*tkkatkkndkswrircysss**ns*ryckcc*tfnsk*twnqyf*skgy*
lqnstckwyklfc*skn*kwlcss*nl*tifwccffsfssrw*skr**nylflitfiqfy
cnkkiykkkenk*inkkink*kymyiikfllkkkkkkk


Frame B:
NNFFFFKKNKQKKLQKKMTKVGGLGATHQADKTVEDIVNAVKPSIQSKLGTNISNLKVIS
YKTQLVNGTNYFVKVRTENGYAHLRIYKPFSGAASLVSVQDGKAKDDEITYF*sllfnfi
vikkytkkkktnk*ikk*inksici**nfslkkkkkk


Frame C:
iisfflkkinkksykkk*qkled*vlliklikqlkil*mllnlqfkvnlepifli*rlla
tklnl*mvqiillk*elkmvmlilefinhflvlll*fqfkmvkqkmmkllifnhfysill
**kniqkkrkqink*knk*ikvyvynkisp*kkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA832 (VSA832Q) /CSM/VS/VSA8-B/VSA832Q.Seq.d/                        620   e-177
SSL186 (SSL186Q) /CSM/SS/SSL1-D/SSL186Q.Seq.d/                        620   e-177
SSJ842 (SSJ842Q) /CSM/SS/SSJ8-B/SSJ842Q.Seq.d/                        620   e-177
SSJ691 (SSJ691Q) /CSM/SS/SSJ6-D/SSJ691Q.Seq.d/                        620   e-177
SSI330 (SSI330Q) /CSM/SS/SSI3-B/SSI330Q.Seq.d/                        620   e-177
SSC133 (SSC133Q) /CSM/SS/SSC1-B/SSC133Q.Seq.d/                        620   e-177
CHF222 (CHF222Q) /CSM/CH/CHF2-A/CHF222Q.Seq.d/                        620   e-177
SSF179 (SSF179Q) /CSM/SS/SSF1-D/SSF179Q.Seq.d/                        615   e-175
SSC812 (SSC812Q) /CSM/SS/SSC8-A/SSC812Q.Seq.d/                        615   e-175
CFA138 (CFA138Q) /CSM/CF/CFA1-B/CFA138Q.Seq.d/                        605   e-172

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Z75955|Z75955.1 Caenorhabditis elegans cosmid R07B7.              48  0.016  2
CC579071|CC579071.1 CH240_458A10.T7 CHORI-240 Bos taurus genomic clone CH240_458A10, genomic survey sequence.    48  0.097  1
AC107308|AC107308.7 Homo sapiens 12 BAC RP11-677M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46  0.33  4
BM681498|BM681498.1 UI-E-EJ0-aij-i-09-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone UI-E-EJ0-aij-i-09-0-UI 3', mRNA sequence.    46  0.38  1
Z75201|Z75201.1 S.cerevisiae chromosome XV reading frame ORF YOR293w.    46  0.38  1
Z75202|Z75202.1 S.cerevisiae chromosome XV reading frame ORF YOR294w.    46  0.38  1
AL049608|AL049608.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence (ESSA project).    42  0.45  7
BH423232|BH423232.1 BOHFN72TF BOHF Brassica oleracea genomic clone BOHFN72, DNA sequence.    30  0.79  4
AC130579|AC130579.3 Rattus norvegicus clone CH230-214O6, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38  0.80  7
AC111427|AC111427.5 Rattus norvegicus clone CH230-337B20, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    32  1.1  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q65YR7) RecName: Full=Cystatin-A2;  &AB189919_1(AB189919|pid:no...   189   2e-47
(Q5R1U3) RecName: Full=Cystatin-A3; AltName: Full=VSA745;  &AB18...   100   2e-20
AJ428051_1(AJ428051|pid:none) Lepidoglyphus destructor mRNA for ...    86   5e-16
AC116987_9(AC116987|pid:none) Dictyostelium discoideum chromosom...    84   2e-15
BT076347_1(BT076347|pid:none) Caligus rogercresseyi clone crog-e...    83   4e-15
EU979494_1(EU979494|pid:none) Ornithoctonus huwena clone HWEc85 ...    78   9e-14
(P01040) RecName: Full=Cystatin-A; AltName: Full=Cystatin-AS; Al...    74   2e-12
(Q65YR8) RecName: Full=Cystatin-A1;  &AB189918_1(AB189918|pid:no...    73   4e-12
(Q8WNR9) RecName: Full=Cystatin-A; AltName: Allergen=Fel d 3;  &...    70   2e-11
AF542131_1(AF542131|pid:none) Theromyzon tessulatum cystatin B m...    70   2e-11

 psg: 0.37  gvh: 0.31  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSC133 is nuc

>SSC133E.Seq
AAATAATTTCTTTTTTTTTAAAAAAAATAAACAAAAAAAGCTACAAAAAAAAATGACAAA
AGTTGGAGGATTAGGTGCTACTCATCAAGCTGATAAAACAGTTGAAGATATTGTAAATGC
TGTTAAACCTTCAATTCAAAGTAAACTTGGAACCAATATTTCTAATCTAAAGGTTATTAG
CTACAAAACTCAACTTGTAAATGGTACAAATTATTTTGTTAAAGTAAGAACTGAAAATGG
TTATGCTCATCTTAGAATTTATAAACCATTTTCTGGTGCTGCTTCTTTAGTTTCAGTTCA
AGATGGTAAAGCAAAAGATGATGAAATTACTTATTTTTAATCACTTTTATTCAATTTTAT
TGTAATAAAAAAATATACAAAAAAAAAGAAAACAAATAAATAAATAAAAAAATAAATAAA
TAAAAGTATATGTATATAATAAAATTTCTCCTTAAAAAAAAAAAAAAAAAAAAA