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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC131
Library SS
(Link to library)
Clone ID SSC131
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01312-1
Original site URL
Representative seq. ID SSC131E
(Link to Original site)
Representative DNA sequence 
>SSC131 (SSC131Q) /CSM/SS/SSC1-B/SSC131Q.Seq.d/
GTAATAGTAATAATAATAGTAATAATAATAATAACAATAATAGTAACAATAGTAACAATA
CTAGTGGTAATAGTATAAATATTCAACCAACATACAATGTCAAAGAGGAAGGTGGTAGTG
AAGAATCAAATAAGAGAATTGAAGATTTCCTTTTAGAACAAGAATTATTTTCCCAATCAA
ATTCACCAAGTGCCGCTTTGACTGCCGCTCAAAAACCAGGCCAAGGTTTGGGAATTTCTC
AAAATCTTTTGGGTATACAAAATAATCCAGATTTCTTTTTAAATAGTACAAATAATATTA
ACAATACAAACACTAACTCAATGGATACTTATGGTGTCTATGGTAACTTTTAAAAATAAT
AAACAACAATAATAATAATAA
sequence update 1997. 9.26
Translated Amino Acid sequence 
NSNNNSNNNNNNNSNNSNNTSGNSINIQPTYNVKEEGGSEESNKRIEDFLLEQELFSQSN
SPSAALTAAQKPGQGLGISQNLLGIQNNPDFFLNSTNNINNTNTNSMDTYGVYGNF*k**
ttiiii
Translated Amino Acid sequence (All Frames) 
Frame A:
viviiiviiiitiivtivtilvviv*ifnqhtmskrkvvvknqirelkisf*nknyfpnq
ihqvpl*lplknqakvweflkifwvykiiqisf*ivqiiltiqtltqwilmvsmvtfknn
kqq****


Frame B:
***********q***q**qy*w**ykystniqcqrgrw**rik*en*rfpfrtriifpik
ftkcrfdcrsktrprfgnfsksfgytk*srflfk*yk*y*qykh*lngylwclw*llkii
nnnnnn


Frame C:
NSNNNSNNNNNNNSNNSNNTSGNSINIQPTYNVKEEGGSEESNKRIEDFLLEQELFSQSN
SPSAALTAAQKPGQGLGISQNLLGIQNNPDFFLNSTNNINNTNTNSMDTYGVYGNF*k**
ttiiii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC131 (SSC131Q) /CSM/SS/SSC1-B/SSC131Q.Seq.d/                        575   e-163
VSI363 (VSI363Q) /CSM/VS/VSI3-C/VSI363Q.Seq.d/                        533   e-151
VSH342 (VSH342Q) /CSM/VS/VSH3-B/VSH342Q.Seq.d/                        527   e-149
SLF631 (SLF631Q) /CSM/SL/SLF6-B/SLF631Q.Seq.d/                        339   2e-92
SSJ327 (SSJ327Q) /CSM/SS/SSJ3-B/SSJ327Q.Seq.d/                         42   0.006
VSG672 (VSG672Q) /CSM/VS/VSG6-C/VSG672Q.Seq.d/                         38   0.093
VFO566 (VFO566Q) /CSM/VF/VFO5-C/VFO566Q.Seq.d/                         38   0.093
VFO279 (VFO279Q) /CSM/VF/VFO2-D/VFO279Q.Seq.d/                         38   0.093
VFO269 (VFO269Q) /CSM/VF/VFO2-C/VFO269Q.Seq.d/                         38   0.093
VFM245 (VFM245Q) /CSM/VF/VFM2-B/VFM245Q.Seq.d/                         38   0.093
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ596520|BQ596520.1 PfESToab18h05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    50  0.020  1
BH163750|BH163750.1 ENTSZ96TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  0.30  1
BH159073|BH159073.1 ENTRH11TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  0.30  1
BD037372|BD037372.1 Sequence tag and encoded human protein.       40  0.31  2
N28368|N28368.1 yx26g01.r1 Soares melanocyte 2NbHM Homo sapiens cDNA clone IMAGE:262896 5', mRNA sequence.    44  1.2  1
AC119739|AC119739.5 Homo sapiens 3 BAC RP11-676G20 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  1.2  1
BH382969|BH382969.1 AG-ND-179F11.TF ND-TAM Anopheles gambiae genomic clone AG-ND-179F11 , DNA sequence.    44  1.2  1
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    50  1.5  3
AQ987754|AQ987754.1 RPCI-23-329F7.TJ RPCI-23 Mus musculus genomic clone RPCI-23-329F7, genomic survey sequence.    40  1.7  2
BQ577257|BQ577257.1 PfESToab16e01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    38  1.8  2
dna update 2003. 7.21
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 449,773,576
protein update 2009. 7. 6
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SSC131 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSC131E
Full length Seq. 
>SSC131E.Seq
GTAATAGTAATAATAATAGTAATAATAATAATAACAATAATAGTAACAATAGTAACAATA
CTAGTGGTAATAGTATAAATATTCAACCAACATACAATGTCAAAGAGGAAGGTGGTAGTG
AAGAATCAAATAAGAGAATTGAAGATTTCCTTTTAGAACAAGAATTATTTTCCCAATCAA
ATTCACCAAGTGCCGCTTTGACTGCCGCTCAAAAACCAGGCCAAGGTTTGGGAATTTCTC
AAAATCTTTTGGGTATACAAAATAATCCAGATTTCTTTTTAAATAGTACAAATAATATTA
ACAATACAAACACTAACTCAATGGATACTTATGGTGTCTATGGTAACTTTTAAAAATAAT
AAACAACAATAATAATAATAA
Length of full length seq. 381