>SSC123 (SSC123Q) /CSM/SS/SSC1-A/SSC123Q.Seq.d/
XXXXXXXXXXCTCTACATACTCAATACTCGTACTATGAAATGGGTTTGTCCAAAGATTGA
CAATGTCATACCTTGTTGTCGTCAACTTCATTCCGCTTGGGTATACAATGGTAAAATGTA
TACTTTGGGTGGCTATTTTAAAAACAAAAGAATGATCGATGTTTATTGTTTCACACCCGA
ACAAACCGTTTCAACTCTACGTGAATTTTGTATTGAAACCATTGTCGAAGATGTTTTCAA
ATATGTACCAATGTTTAATCATTTCCCAGAGGAAATACTATATCAAATTTTCTCAAGATT
ATCTCAAGCTGGAAAATTAATACCACTTCAATTGGATTATTTAATTAGAAAATCTTATTT
AGCCGACCAAGTTGCTTTAGTTTTATCTACCAATAAGAATGGTGGTACAATTGAAGAAAC
TCCAAATCCAATTTAAAAATATTAATTAAATAATAAATAATTTTAATAAATAATAAATAA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---YILNTRTMKWVCPKIDNVIPCCRQLHSAWVYNGKMYTLGGYFKNKRMIDVYCFTPEQ
TVSTLREFCIETIVEDVFKYVPMFNHFPEEILYQIFSRLSQAGKLIPLQLDYLIRKSYLA
DQVALVLSTNKNGGTIEETPNPI*ky*lnnk*f**iinnkkkkkkkkkkkkk

Frame A:
---stysilvl*ngfvqrltmsylvvvnfiplgytmvkcilwvailktke*smfivshpn
kpfqlyvnfvlkplskmfsnmyqcliisqrkyyikfsqdylklen*yhfnwii*lenli*
ptkll*fylpirmvvqlkklqiqfknin*iinnfnk**iikkkkkkkkkkkkk


Frame B:
---lhtqysyyemglskd*qchtllsstsfrlgiqw*nvyfgwlf*kqkndrcllfhtrt
nrfnst*ily*nhcrrcfqictnv*sfprgntisnflkiisswkinttsiglfn*kilfs
rpscfsfiyq*ewwyn*rnsksnlkilik**iilinnk**kkkkkkkkkkkk


Frame C:
---YILNTRTMKWVCPKIDNVIPCCRQLHSAWVYNGKMYTLGGYFKNKRMIDVYCFTPEQ
TVSTLREFCIETIVEDVFKYVPMFNHFPEEILYQIFSRLSQAGKLIPLQLDYLIRKSYLA
DQVALVLSTNKNGGTIEETPNPI*ky*lnnk*f**iinnkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC123 (SSC123Q) /CSM/SS/SSC1-A/SSC123Q.Seq.d/                        831   0.0
VSB859 (VSB859Q) /CSM/VS/VSB8-C/VSB859Q.Seq.d/                        815   0.0
VSI275 (VSI275Q) /CSM/VS/VSI2-D/VSI275Q.Seq.d/                        797   0.0
SFL173 (SFL173Q) /CSM/SF/SFL1-D/SFL173Q.Seq.d/                        785   0.0
SSL219 (SSL219Q) /CSM/SS/SSL2-A/SSL219Q.Seq.d/                        521   e-147
SHK388 (SHK388Q) /CSM/SH/SHK3-D/SHK388Q.Seq.d/                         36   0.51
SHE485 (SHE485Q) /CSM/SH/SHE4-D/SHE485Q.Seq.d/                         36   0.51
CHA144 (CHA144Q) /CSM/CH/CHA1-B/CHA144Q.Seq.d/                         36   0.51
VFL636 (VFL636Q) /CSM/VF/VFL6-B/VFL636Q.Seq.d/                         34   2.0
VFH810 (VFH810Q) /CSM/VF/VFH8-A/VFH810Q.Seq.d/                         34   2.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC107155|AC107155.4 Rattus norvegicus clone CH230-231N17, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    40  1.7  2
AC012429|AC012429.4 Homo sapiens clone RP11-8H23, WORKING DRAFT SEQUENCE, 9 unordered pieces.    36  1.8  4
BG730355|BG730355.1 df42f09.y1 Wellcome CRC pRN3 head Xenopus laevis cDNA clone IMAGE:3581320 5' similar to TR:O60573 O60573 EUKARYOTIC TRANSLATION INITIATION FACTOR 4E HOMOLOGOUS PROTEIN ;, mRNA sequence.    34  3.2  2
AC105091|AC105091.3 Homo sapiens chromosome 8, clone RP11-479P21, complete sequence.    36  3.3  2
AC005636|AC005636.6 Drosophila melanogaster chromosome 2 clone DS05148 (D394) map 41C6-41D1 strain y; cn bw sp, WORKING DRAFT SEQUENCE, 18 unordered pieces.    38  5.7  2
AC026719|AC026719.4 Homo sapiens chromosome 5 clone CTD-2161F6, complete sequence.    32  6.3  6
AC127049|AC127049.3 Rattus norvegicus clone CH230-27A14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  6.6  1
AC112097|AC112097.5 Rattus norvegicus clone CH230-142P8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  6.6  1
BX548078|BX548078.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-212C13.    42  6.6  1
CC510399|CC510399.1 CH240_353B2.T7 CHORI-240 Bos taurus genomic clone CH240_353B2, genomic survey sequence.    42  6.6  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC056132_1(BC056132|pid:none) Xenopus laevis kelch domain contai...    42   0.007
AK097719_1(AK097719|pid:none) Homo sapiens cDNA FLJ40400 fis, cl...    41   0.015
CR956379_15(CR956379|pid:none) Pig DNA sequence from clone CH242...    41   0.015
(Q9BQ90) RecName: Full=Kelch domain-containing protein 3; AltNam...    41   0.015
(Q58CV6) RecName: Full=Kelch domain-containing protein 3;  &BC10...    41   0.015
AK004964_1(AK004964|pid:none) Mus musculus adult male liver cDNA...    41   0.015
(Q6AYI2) RecName: Full=Kelch domain-containing protein 3;  &BC07...    41   0.015
CR956379_13(CR956379|pid:none) Pig DNA sequence from clone CH242...    41   0.015
CR956379_16(CR956379|pid:none) Pig DNA sequence from clone CH242...    41   0.015
BC009460_1(BC009460|pid:none) Homo sapiens kelch domain containi...    41   0.015

 psg: 0.62  gvh: 0.38  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSC123 is mit

>SSC123Z.Seq
----------CTCTACATACTCAATACTCGTACTATGAAATGGGTTTGTCCAAAGATTGA
CAATGTCATACCTTGTTGTCGTCAACTTCATTCCGCTTGGGTATACAATGGTAAAATGTA
TACTTTGGGTGGCTATTTTAAAAACAAAAGAATGATCGATGTTTATTGTTTCACACCCGA
ACAAACCGTTTCAACTCTACGTGAATTTTGTATTGAAACCATTGTCGAAGATGTTTTCAA
ATATGTACCAATGTTTAATCATTTCCCAGAGGAAATACTATATCAAATTTTCTCAAGATT
ATCTCAAGCTGGAAAATTAATACCACTTCAATTGGATTATTTAATTAGAAAATCTTATTT
AGCCGACCAAGTTGCTTTAGTTTTATCTACCAATAAGAATGGTGGTACAATTGAAGAAAC
TCCAAATCCAATTTAAAAATATTAATTAAATAATAAATAATTTTAATAAATAATAAATAA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA