>SSC114 (SSC114Q) /CSM/SS/SSC1-A/SSC114Q.Seq.d/
XXXXXXXXXXGAAATTATCATTAAAAGGTTCATCCAATACAAATAATCAAATTAAATCAT
CATTACAAAGAAATATAAAGAATTCAATTTTAGCACAATATCCAAAATTAAAAGATATAG
AAGAGGATGTATTCCCAAAAAAAGTTCCAATTGTTCAAGTTAAATGTCAAAATCATATAA
ATTTAGTTTTAATTAACAATGAAGTTTTATTTTTTAATGAAAGAGAAGGACCATATTATC
CAACTTTAAGATTCTTACATAAATATCCAAATATTTTACCACATGTTCAAGTTGATAAAG
GTGCAATTAAATTCGTATTACAAGGCGCAAATATTATGTGTAGAGGTTTAACATCACCAG
GTGCAAAGATGGAAGTTGATTTACCAGTTGATGCTATTGTTGCTGTTATGGCTGAAGGTA
AAGATCATGCTTCTGCAATTGGTGTAATGAAAATGTCAACAAATGATATTCGTACAATCA
ATAATGACATTGGTATCAATAATATTCATTATTTAGGTGATAGTTTATATATGTCACCAA
ACCTTGAATAAACTTTAATAAAAATATAAATATTAGAAAAGAA

---KLSLKGSSNTNNQIKSSLQRNIKNSILAQYPKLKDIEEDVFPKKVPIVQVKCQNHIN
LVLINNEVLFFNEREGPYYPTLRFLHKYPNILPHVQVDKGAIKFVLQGANIMCRGLTSPG
AKMEVDLPVDAIVAVMAEGKDHASAIGVMKMSTNDIRTINNDIGINNIHYLGDSLYMSPN
LE*tliki*ilek

Frame A:
---KLSLKGSSNTNNQIKSSLQRNIKNSILAQYPKLKDIEEDVFPKKVPIVQVKCQNHIN
LVLINNEVLFFNEREGPYYPTLRFLHKYPNILPHVQVDKGAIKFVLQGANIMCRGLTSPG
AKMEVDLPVDAIVAVMAEGKDHASAIGVMKMSTNDIRTINNDIGINNIHYLGDSLYMSPN
LE*tliki*ilek


Frame B:
---nyh*kvhpiqiiklnhhykei*riqf*hniqn*ki*krmysqkkfqlfklnvkii*i
*f*ltmkfyflmkekdhiiql*dsyiniqifyhmfklikvqlnsyykaqilcvev*hhqv
qrwkliyqlmlllllwlkvkimllqlv**kcqqmifvqsimtlvsiifii*vivyichqt
lnkl**kyky*kr


Frame C:
---iiikrfiqyk*sn*iiitkkykefnfstiskikryrrgcipkkssncss*msksykf
sfn*q*sfif**krrtilsnfkilt*iskyfttcss**rcn*iritrrkyyv*rfnitrc
kdgs*fts*cycccyg*r*rscfcnwcnenvnk*ysynq**hwyq*yslfr**fiyvtkp
*infnkninirke

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC114 (SSC114Q) /CSM/SS/SSC1-A/SSC114Q.Seq.d/                       1094   0.0
SSL108 (SSL108Q) /CSM/SS/SSL1-A/SSL108Q.Seq.d/                       1066   0.0
FC-BM14 (FC-BM14Q) /CSM/FC/FC-BM/FC-BM14Q.Seq.d/                      680   0.0
SSI302 (SSI302Q) /CSM/SS/SSI3-A/SSI302Q.Seq.d/                        394   e-109
SLG165 (SLG165Q) /CSM/SL/SLG1-C/SLG165Q.Seq.d/                         40   0.037
CHP329 (CHP329Q) /CSM/CH/CHP3-B/CHP329Q.Seq.d/                         40   0.037
VFM417 (VFM417Q) /CSM/VF/VFM4-A/VFM417Q.Seq.d/                         38   0.15
VFL470 (VFL470Q) /CSM/VF/VFL4-C/VFL470Q.Seq.d/                         38   0.15
VFA765 (VFA765Q) /CSM/VF/VFA7-C/VFA765Q.Seq.d/                         38   0.15
SFJ480 (SFJ480Q) /CSM/SF/SFJ4-D/SFJ480Q.Seq.d/                         38   0.15

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.   406  0.0  4
BI508431|BI508431.1 BB170014B10A01 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170014B10A01 5', mRNA sequence.    46  2e-15  4
BI513561|BI513561.1 BB160013A10B04 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160013A10B04 5', mRNA sequence.    46  1e-09  3
BU722479|BU722479.1 SJMAIF08 SJM Schistosoma japonicum cDNA, mRNA sequence.    40  7e-08  3
BU803376|BU803376.1 SJFATH10 SJF Schistosoma japonicum cDNA, mRNA sequence.    40  7e-08  3
AC084567|AC084567.1 Caenorhabditis briggsae cosmid G36N05, complete sequence.    50  2e-04  3
BQ508596|BQ508596.2 EST616011 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGX23 3' end, mRNA sequence.    38  3e-04  4
BM112525|BM112525.1 EST560061 potato roots Solanum tuberosum cDNA clone cPRO14H17 5' end, mRNA sequence.    38  3e-04  4
BG599968|BG599968.1 EST504863 cSTS Solanum tuberosum cDNA clone cSTS26J12 5' sequence, mRNA sequence.    38  3e-04  4
BQ508595|BQ508595.2 EST616010 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGX23 5' end, mRNA sequence.    38  3e-04  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86KL4) RecName: Full=Malignant T cell amplified sequence 1 hom...   357   2e-97
EF082119_1(EF082119|pid:none) Picea sitchensis clone WS02812_C11...   214   2e-54
EF145257_1(EF145257|pid:none) Populus trichocarpa clone WS01122_...   210   3e-53
EF145517_1(EF145517|pid:none) Populus trichocarpa clone WS01125_...   210   3e-53
EF146054_1(EF146054|pid:none) Populus trichocarpa clone WS0115_D...   207   2e-52
BT062039_1(BT062039|pid:none) Zea mays full-length cDNA clone ZM...   207   2e-52
EU284124_1(EU284124|pid:none) Cucumis sativus pseudouridine synt...   201   1e-50
AY128356_1(AY128356|pid:none) Arabidopsis thaliana unknown prote...   201   2e-50
(Q9DB27) RecName: Full=Malignant T cell amplified sequence 1;   ...   200   2e-50
(Q4G009) RecName: Full=Malignant T cell amplified sequence 1;   ...   200   2e-50

 psg: 0.62  gvh: 0.24  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for SSC114 is nuc

>SSC114Z.Seq
----------GAAATTATCATTAAAAGGTTCATCCAATACAAATAATCAAATTAAATCAT
CATTACAAAGAAATATAAAGAATTCAATTTTAGCACAATATCCAAAATTAAAAGATATAG
AAGAGGATGTATTCCCAAAAAAAGTTCCAATTGTTCAAGTTAAATGTCAAAATCATATAA
ATTTAGTTTTAATTAACAATGAAGTTTTATTTTTTAATGAAAGAGAAGGACCATATTATC
CAACTTTAAGATTCTTACATAAATATCCAAATATTTTACCACATGTTCAAGTTGATAAAG
GTGCAATTAAATTCGTATTACAAGGCGCAAATATTATGTGTAGAGGTTTAACATCACCAG
GTGCAAAGATGGAAGTTGATTTACCAGTTGATGCTATTGTTGCTGTTATGGCTGAAGGTA
AAGATCATGCTTCTGCAATTGGTGTAATGAAAATGTCAACAAATGATATTCGTACAATCA
ATAATGACATTGGTATCAATAATATTCATTATTTAGGTGATAGTTTATATATGTCACCAA
ACCTTGAATAAACTTTAATAAAAATATAAATATTAGAAAAGAA