SSC113
Library SS
(Link to library)
Clone ID SSC113
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15903-1
Original site URL
Representative seq. ID SSC113P
(Link to Original site)
Representative DNA sequence
>SSC113 (SSC113Q) /CSM/SS/SSC1-A/SSC113Q.Seq.d/
CATCATTACTACATATATACTTTTCTGACCCATTTATTAAAGAAAAAAAAAAAAAAAAGT
ATTTTAAATAATAATAACTTTTAAAATTAAATAGTTTTTTTTGTTTTTTTTTTTCAAATA
ATAATAACTAATAATTAACAAGTAAATAAAATTTTTAGAATAGTAATATTATAATAGAAA
AAAAAAAAATTAAAAAAAAAACAAAAAAAGAATAAGAATGAGTGAATGGGTACCAAACCA
AGATGGTTTAAAACAGTTAGTTTATGTTTTAAATTTATCAAATTCAACATCAAGAGAAGT
TCATGACCAAATTAGAGAGGAATTAGATAAATTCCATTCAGTACCAGATTATAATAACTA
TCTAACACTTATATTCAAAAGTAATGAATTACAACCACATATTAGAAGTGTTGCAGGTTT
AGTTTTAAAGACTAATATCAAACAATACTTTGAAAAAATGCCAAGAGAAGTTCAAAACTA
TATCAAAAGGGAGATTTTACCAGTTTTATCTGACCCAGATGCTTCAGTTCGTCATACAGT
TGGTAATATCATTACAAATTTAATTAAAAAGAGTTGTTTTTCTGAATGGCCAGAATTATT
ACCAGCATTAAATTTAGCATTAGATAGTAATXXXXXXXXXXGTGGTTAATCATTAACAAT
AATCCAAATGGTGCTTTACGTCATTTAGTTTACATTTGTGACGCTGTTGCCTCTTGGGAT
AAAATGCAACCTGATCTCTATGAAGCTTACTTTAAACTTTTACATATGTATAAAACTAGT
ATGGGTGGTGTTTGGGCTCAATTCTATAATCAATTTCCAGAACAACTTCGTGAAATTTTA
AATGAGAAATTTAAATTGAATCAAGATATATCTCAATAAATAAANAAAAATAAATAAAAA
ATAAAAAATAAAAAATAAAAAATAAAAANAAAATCAATAAATTAATAAATAATAAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATNATAATAATAATAATAATAATAATAATAATAATAATTTAAAA
AAAAAATAAAAATAAAAATAAAAAAAAAAAAATTAA
sequence update 1998. 7.30
Translated Amino Acid sequence
iittyilf*piy*rkkkkkvf*iiitfkik*fflffffk***liink*ikfle**yynrk
kkn*KKNKKRIRMSEWVPNQDGLKQLVYVLNLSNSTSREVHDQIREELDKFHSVPDYNNY
LTLIFKSNELQPHIRSVAGLVLKTNIKQYFEKMPREVQNYIKREILPVLSDPDASVRHTV
GNIITNLIKKSCFSEWPELLPALNLALDSN---

---WLIINNNPNGALRHLVYICDAVASWDKMQPDLYEAYFKLLHMYKTSMGGVWAQFYNQ
FPEQLREILNEKFKLNQDISQ*ixknk*kiknkk*kikxksin**iinnnnnnnnnnnnn
nnnnnnnnnnnnnnnxnnnnnnnnnnnlkkk*k*k*kkkn*


Translated Amino Acid sequence (All Frames)
Frame A:
hhyyiytflthllkkkkkksilnnnnf*n*ivffvfffqiiitnn*qvnkifrivil**k
kkklkkkqkknkne*mgtkprwfktvslcfkfikfnikrss*pn*rgir*ipfstrl**l
sntyiqk**ittty*kccrfsfkd*yqtil*knakrssklyqkgdftsfi*prcfsssys
w*yhykfn*kelff*mariitsikfsir**---

---vvnh*q*skwcftsfslhl*rccllg*nat*sl*sll*tftyv*n*ygwclgsil*s
isrtts*nfk*ei*iesryisinkxk*iknkk*kiknkxkinklinnk************
***************x***********fkkkikikikkkkl

Frame B:
iittyilf*piy*rkkkkkvf*iiitfkik*fflffffk***liink*ikfle**yynrk
kkn*KKNKKRIRMSEWVPNQDGLKQLVYVLNLSNSTSREVHDQIREELDKFHSVPDYNNY
LTLIFKSNELQPHIRSVAGLVLKTNIKQYFEKMPREVQNYIKREILPVLSDPDASVRHTV
GNIITNLIKKSCFSEWPELLPALNLALDSN---

---WLIINNNPNGALRHLVYICDAVASWDKMQPDLYEAYFKLLHMYKTSMGGVWAQFYNQ
FPEQLREILNEKFKLNQDISQ*ixknk*kiknkk*kikxksin**iinnnnnnnnnnnnn
nnnnnnnnnnnnnnnxnnnnnnnnnnnlkkk*k*k*kkkn*

Frame C:
sllhiyfsdpfikekkkkkyfk***llklnsffcfffsnnnn**ltsk*nf*nsniiiek
kkikkktkke*e*vngyqtkmv*ns*fmf*iyqiqhqekfmtklern*insiqyqiiiti
*hlyskvmnynhilevlqv*f*rlisnntlkkcqekfktiskgrfyqfyltqmlqfviql
vislqi*lkrvvflngqnyyqh*i*h*iv---

---g*sltiiqmvlyvi*ftfvtllplgikcnlismkltlnfyiciklvwvvfglnsiin
fqnnfvkf*mrnln*ikiylnk*xkinkk*kiknkk*kxnq*ink**iiiiiiiiiiiii
iiiiiiiiiiiiiixiiiiiiiiiiii*kknknknkkkki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC113 (SSC113Q) /CSM/SS/SSC1-A/SSC113Q.Seq.d/ 1259 0.0
VSI392 (VSI392Q) /CSM/VS/VSI3-D/VSI392Q.Seq.d/ 462 e-129
VHI160 (VHI160Q) /CSM/VH/VHI1-C/VHI160Q.Seq.d/ 462 e-129
VFC768 (VFC768Q) /CSM/VF/VFC7-C/VFC768Q.Seq.d/ 446 e-124
CHF761 (CHF761Q) /CSM/CH/CHF7-C/CHF761Q.Seq.d/ 389 e-107
SHL156 (SHL156Q) /CSM/SH/SHL1-C/SHL156Q.Seq.d/ 248 2e-64
SHK292 (SHK292Q) /CSM/SH/SHK2-D/SHK292Q.Seq.d/ 42 0.018
SHI859 (SHI859Q) /CSM/SH/SHI8-C/SHI859Q.Seq.d/ 40 0.071
SSE526 (SSE526Q) /CSM/SS/SSE5-B/SSE526Q.Seq.d/ 38 0.28
VSK376 (VSK376Q) /CSM/VS/VSK3-D/VSK376Q.Seq.d/ 36 1.1

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BH509949|BH509949.1 BOGYR15TF BOGY Brassica oleracea genomic clone BOGYR15, DNA sequence. 44 0.008 2
BH485321|BH485321.1 BOGTY12TF BOGT Brassica oleracea genomic clone BOGTY12, DNA sequence. 44 0.008 2
BX255950|BX255950.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-250K6. 34 0.037 8
BH693431|BH693431.1 BOMIH93TF BO_2_3_KB Brassica oleracea genomic clone BOMIH93, DNA sequence. 40 0.11 2
AP003154|AP003154.2 Mus musculus genomic DN, chromosome 16 clone:RP21-564B5, complete sequence. 48 0.23 1
AL743313|AL743313.1 Danio rerio genomic clone DKey-12H22, genomic survey sequence. 48 0.23 1
AE015942|AE015942.1 Clostridium tetani E88, section 7 of 10 of the complete genome. 32 0.41 11
BU965884|BU965884.1 ssalcna001052 muscle_skin Salmo salar cDNA, mRNA sequence. 36 0.82 3
AC128559|AC128559.4 Rattus norvegicus clone CH230-298O6, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 46 0.93 1
BM941534|BM941534.1 UI-M-CG0p-bgg-b-01-0-UI.r1 NIH_BMAP_Ret4_S2 Mus musculus cDNA clone UI-M-CG0p-bgg-b-01-0-UI 5', mRNA sequence. 46 0.93 1
dna update 2003. 7.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55CQ7) RecName: Full=Transportin; AltName: Full=Importin subun... 280 6e-74
FN318261_1(FN318261|pid:none) Schistosoma japonicum isolate Anhu... 101 5e-20
(Q8BFY9) RecName: Full=Transportin-1; AltName: Full=Importin bet... 100 1e-19
PDBN(1QBK)B MOL_ID: 1;MOL_ID: 1; MOLECULE: KARYOPHERIN BETA2; MO... 100 1e-19
AK167049_1(AK167049|pid:none) Mus musculus blastocyst blastocyst... 100 1e-19
U70322_1(U70322|pid:none) Human transportin (TRN) mRNA, complete... 100 1e-19
BC084944_1(BC084944|pid:none) Xenopus laevis hypothetical LOC495... 100 1e-19
(Q92973) RecName: Full=Transportin-1; AltName: Full=Importin bet... 100 1e-19
AK029953_1(AK029953|pid:none) Mus musculus adult male testis cDN... 100 1e-19
BC103374_1(BC103374|pid:none) Bos taurus transportin 1, mRNA (cD... 100 1e-19
protein update 2009. 6. 9
PSORT

psg: 0.65 gvh: 0.49 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
28.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SSC113 is cyt

5' end seq. ID SSC113F
5' end seq.
>SSC113F.Seq
CATCATTACTACATATATACTTTTCTGACCCATTTATTAAAGAAAAAAAAAAAAAAAAGT
ATTTTAAATAATAATAACTTTTAAAATTAAATAGTTTTTTTTGTTTTTTTTTTTCAAATA
ATAATAACTAATAATTAACAAGTAAATAAAATTTTTAGAATAGTAATATTATAATAGAAA
AAAAAAAAATTAAAAAAAAAACAAAAAAAGAATAAGAATGAGTGAATGGGTACCAAACCA
AGATGGTTTAAAACAGTTAGTTTATGTTTTAAATTTATCAAATTCAACATCAAGAGAAGT
TCATGACCAAATTAGAGAGGAATTAGATAAATTCCATTCAGTACCAGATTATAATAACTA
TCTAACACTTATATTCAAAAGTAATGAATTACAACCACATATTAGAAGTGTTGCAGGTTT
AGTTTTAAAGACTAATATCAAACAATACTTTGAAAAAATGCCAAGAGAAGTTCAAAACTA
TATCAAAAGGGAGATTTTACCAGTTTTATCTGACCCAGATGCTTCAGTTCGTCATACAGT
TGGTAATATCATTACAAATTTAATTAAAAAGAGTTGTTTTTCTGAATGGCCAGAATTATT
ACCAGCATTAAATTTAGCATTAGATAGTAAT----------
Length of 5' end seq. 631
3' end seq. ID SSC113Z
3' end seq.
>SSC113Z.Seq
----------GTGGTTAATCATTAACAATAATCCAAATGGTGCTTTACGTCATTTAGTTT
ACATTTGTGACGCTGTTGCCTCTTGGGATAAAATGCAACCTGATCTCTATGAAGCTTACT
TTAAACTTTTACATATGTATAAAACTAGTATGGGTGGTGTTTGGGCTCAATTCTATAATC
AATTTCCAGAACAACTTCGTGAAATTTTAAATGAGAAATTTAAATTGAATCAAGATATAT
CTCAATAAATAAANAAAAATAAATAAAAAATAAAAAATAAAAAATAAAAAATAAAAANAA
AATCAATAAATTAATAAATAATAAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATNATAATAATAATA
ATAATAATAATAATAATAATAATTTAAAAAAAAAATAAAAATAAAAATAAAAAAAAAAAA
ATTAA
Length of 3' end seq. 475
Connected seq. ID SSC113P
Connected seq.
>SSC113P.Seq
CATCATTACTACATATATACTTTTCTGACCCATTTATTAAAGAAAAAAAAAAAAAAAAGT
ATTTTAAATAATAATAACTTTTAAAATTAAATAGTTTTTTTTGTTTTTTTTTTTCAAATA
ATAATAACTAATAATTAACAAGTAAATAAAATTTTTAGAATAGTAATATTATAATAGAAA
AAAAAAAAATTAAAAAAAAAACAAAAAAAGAATAAGAATGAGTGAATGGGTACCAAACCA
AGATGGTTTAAAACAGTTAGTTTATGTTTTAAATTTATCAAATTCAACATCAAGAGAAGT
TCATGACCAAATTAGAGAGGAATTAGATAAATTCCATTCAGTACCAGATTATAATAACTA
TCTAACACTTATATTCAAAAGTAATGAATTACAACCACATATTAGAAGTGTTGCAGGTTT
AGTTTTAAAGACTAATATCAAACAATACTTTGAAAAAATGCCAAGAGAAGTTCAAAACTA
TATCAAAAGGGAGATTTTACCAGTTTTATCTGACCCAGATGCTTCAGTTCGTCATACAGT
TGGTAATATCATTACAAATTTAATTAAAAAGAGTTGTTTTTCTGAATGGCCAGAATTATT
ACCAGCATTAAATTTAGCATTAGATAGTAAT----------GTGGTTAATCATTAACAAT
AATCCAAATGGTGCTTTACGTCATTTAGTTTACATTTGTGACGCTGTTGCCTCTTGGGAT
AAAATGCAACCTGATCTCTATGAAGCTTACTTTAAACTTTTACATATGTATAAAACTAGT
ATGGGTGGTGTTTGGGCTCAATTCTATAATCAATTTCCAGAACAACTTCGTGAAATTTTA
AATGAGAAATTTAAATTGAATCAAGATATATCTCAATAAATAAANAAAAATAAATAAAAA
ATAAAAAATAAAAAATAAAAAATAAAAANAAAATCAATAAATTAATAAATAATAAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATNATAATAATAATAATAATAATAATAATAATAATAATTTAAAA
AAAAAATAAAAATAAAAATAAAAAAAAAAAAATTAA
Length of connected seq. 1106
Full length Seq ID -
Full length Seq. -
Length of full length seq. -