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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFK790
Library AF
(Link to library)
Clone ID AFK790
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U08848-1
Original site URL
Representative seq. ID AFK790P
(Link to Original site)
Representative DNA sequence 
>AFK790 (AFK790Q) /CSM/AF/AFK7-D/AFK790Q.Seq.d/
ACAAAAATATTATTCTATTGTAATTCAATTTAAAAATATATTTATATAATATGTCAATTA
AAAATGATACAAAAACATTCTTAGGATTTATTGATGAACCAATTGATAGTTTAAAAATAA
ATAAAGAAGAGGAAGAAGAGGGTGATTACCCTTATTCAACAAAAATTGGTGGATCACCTA
TATGGTGTGCTCAACCACCAAATCATTTAAAAGATTTAAAATGTAATATGTGTAGTTCAA
ATTTATCATTTTTATTACAAGCATATTGTCCATTAAATTCACTTCCAGATTATGAAAGAA
ATTTCTACGTTTTTGTTTGTCCAAGTAATGAATGCAATCCATTATCTTCTGGTTGGAGAG
TAATTAAATGTTTAGATCCATTAAAAGAAGAGGAAGAAGATTTACAAAATGAACAAATTG
AGGATAAAGTCAAGAGTTACATCAACAAAATGTAATTGAAAAACCACTTGATGATTGXXX
XXXXXXXGTATTAATGAGGAAGAAATAATATCAGGTGTAATTATTCCAGATGATAAAAGT
AATAAATTTCAATCATGTACTTTATTCATTGATGAAGAATCAATTTATACAAAAAAAGAT
AAAAAATCATCAAATAAAAACAATAATAATAATGAAGAATCAGATTTAAATCAAAGTATT
TTAAAGAAATATCAAGGTATAGAGAATACATTTGGTGATGAAAGTGCAGAATGGTCAGAT
GAAACCTATGAATATGTAAAAGATCGTGTTTTTAGTAAATTCATTAAAAAGATNTCATTT
GCACCTGACCAATGTTTACGTTATTCATATGGTGGTAAACCATTACCAATGACTGCANAG
GGTGTAAAATTATTAACATTCAACCAAATTAATAATTTACCNCCACATTGCTCAATTTGT
AATTCTGTTAAAGTATTTGAATTTCAAATTTTGTCAACTTTAATAGCTCAAATTAAGTTA
AGAGATCCTTTAGATCCAAAAAAGAATCAATTAGAGTTTAGTAATGCTTTCATTTACACT
TGNCCAAATAATTGTTTTGATAAACAAAAAGATACTTTTAATAATGTTATTTATAATGAA
GAAACTATTAAAATNAAAAAAGTATTTAAAAAAAAAAAAATTAAATAAAATACAAATTTT
AAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
qkyysiviqfknifi*yvn*k*yknilriy**tn**fknk*rrgrrg*lplfnknwwity
mvcsttksfkrfkm*yv*fkfiifitsilsikftsrl*kkflrfclsk**mqsiifwles
n*mfrsikrrgrrftk*tn*g*SQELHQQNVIEKPLDD---

---INEEEIISGVIIPDDKSNKFQSCTLFIDEESIYTKKDKKSSNKNNNNNEESDLNQSI
LKKYQGIENTFGDESAEWSDETYEYVKDRVFSKFIKKXSFAPDQCLRYSYGGKPLPMTAX
GVKLLTFNQINNLPPHCSICNSVKVFEFQILSTLIAQIKLRDPLDPKKNQLEFSNAFIYT
XPNNCFDKQKDTFNNVIYNEETIKXKKVFKKKKIK*ntnfk
Translated Amino Acid sequence (All Frames) 
Frame A:
tkilfycnsi*kyiyiicqlkmiqkhs*dllmnqliv*k*ikkrkkrvitliqqklvdhl
ygvlnhqii*ki*nvicvvqiyhfyykhivh*ihfqimkeistflfvqvmnaihyllvge
*lnv*ih*kkrkkiykmnklriksrvtstkcn*ktt**l---

---vlmrkk*yqv*lfqmikvinfnhvlyslmknqfiqkkiknhqiktiiimknqi*ikv
f*rnikv*rihlvmkvqngqmkpmnm*kivflvnslkrxhlhltnvyvihmvvnhyq*lx
rv*ny*hstkliiyxhiaqfvillkylnfkfcql**lkls*eil*iqkrin*slvmlsft
lxqiivlinkkillimlfimkkllkxkkylkkkklnkiqilk

Frame B:
qkyysiviqfknifi*yvn*k*yknilriy**tn**fknk*rrgrrg*lplfnknwwity
mvcsttksfkrfkm*yv*fkfiifitsilsikftsrl*kkflrfclsk**mqsiifwles
n*mfrsikrrgrrftk*tn*g*SQELHQQNVIEKPLDD---

---y**grnnircnysr**k**isimyfih**rinlykkr*kiik*kq****rirfksky
fkeisryreyiw**kcrmvr*nl*ickrscf**ih*kdxict*pmftlfiww*titndcx
gckiiniqpn**ftxtllnl*fc*si*isnfvnfnssn*vkrsfrskkesirv**cfhlh
lxk*lf**tkryf**cyl**rny*nxksi*kkkn*ikykf*k

Frame C:
kniill*fnlkiylynmsikndtktflgfidepidslkinkeeeeegdypystkiggspi
wcaqppnhlkdlkcnmcssnlsfllqaycplnslpdyernfyvfvcpsnecnplssgwrv
ikcldplkeeeedlqneqiedkvksyinkm*lknhlmi---

---INEEEIISGVIIPDDKSNKFQSCTLFIDEESIYTKKDKKSSNKNNNNNEESDLNQSI
LKKYQGIENTFGDESAEWSDETYEYVKDRVFSKFIKKXSFAPDQCLRYSYGGKPLPMTAX
GVKLLTFNQINNLPPHCSICNSVKVFEFQILSTLIAQIKLRDPLDPKKNQLEFSNAFIYT
XPNNCFDKQKDTFNNVIYNEETIKXKKVFKKKKIK*ntnfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFK790 (AFK790Q) /CSM/AF/AFK7-D/AFK790Q.Seq.d/                        981   0.0
SSL545 (SSL545Q) /CSM/SS/SSL5-B/SSL545Q.Seq.d/                         44   0.005
FC-AZ16 (FC-AZ16Q) /CSM/FC/FC-AZ/FC-AZ16Q.Seq.d/                       44   0.005
VFN225 (VFN225Q) /CSM/VF/VFN2-B/VFN225Q.Seq.d/                         42   0.018
VFK542 (VFK542Q) /CSM/VF/VFK5-B/VFK542Q.Seq.d/                         42   0.018
VFI527 (VFI527Q) /CSM/VF/VFI5-B/VFI527Q.Seq.d/                         42   0.018
AFN774 (AFN774Q) /CSM/AF/AFN7-D/AFN774Q.Seq.d/                         42   0.018
VHG532 (VHG532Q) /CSM/VH/VHG5-B/VHG532Q.Seq.d/                         40   0.073
VFN450 (VFN450Q) /CSM/VF/VFN4-C/VFN450Q.Seq.d/                         40   0.073
VFM657 (VFM657Q) /CSM/VF/VFM6-C/VFM657Q.Seq.d/                         40   0.073
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   4e-12  25
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    42   1e-10  22
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   2e-09  21
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    38   4e-09  18
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    38   5e-09  20
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   8e-09  31
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    42   8e-09  20
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   2e-08  23
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.    40   2e-08  12
AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of the complete genome.    34   3e-08  19
dna update 2004. 8. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5ZID2) RecName: Full=Programmed cell death protein 2-like;  &A...    71   6e-11
BC046049_1(BC046049|pid:none) Danio rerio zgc:56288, mRNA (cDNA ...    66   2e-09
BX942839_2(BX942839|pid:none) Zebrafish DNA sequence from clone ...    66   2e-09
AY085122_1(AY085122|pid:none) Arabidopsis thaliana clone 13188 m...    64   1e-08
(Q9BRP1) RecName: Full=Programmed cell death protein 2-like;  &B...    61   8e-08
AK317439_1(AK317439|pid:none) Arabidopsis thaliana AT5G64830 mRN...    60   1e-07
AB019236_5(AB019236|pid:none) Arabidopsis thaliana genomic DNA, ...    60   1e-07
CR855225_15(CR855225|pid:none) Oryza sativa genomic DNA, chromos...    60   1e-07
CR382128_344(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    60   1e-07
AK065522_1(AK065522|pid:none) Oryza sativa Japonica Group cDNA c...    60   1e-07
protein update 2009. 4.25
PSORT 

 psg: 0.75  gvh: 0.25  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for AFK790 is nuc
5' end seq. ID AFK790F
5' end seq. 
>AFK790F.Seq
ACAAAAATATTATTCTATTGTAATTCAATTTAAAAATATATTTATATAATATGTCAATTA
AAAATGATACAAAAACATTCTTAGGATTTATTGATGAACCAATTGATAGTTTAAAAATAA
ATAAAGAAGAGGAAGAAGAGGGTGATTACCCTTATTCAACAAAAATTGGTGGATCACCTA
TATGGTGTGCTCAACCACCAAATCATTTAAAAGATTTAAAATGTAATATGTGTAGTTCAA
ATTTATCATTTTTATTACAAGCATATTGTCCATTAAATTCACTTCCAGATTATGAAAGAA
ATTTCTACGTTTTTGTTTGTCCAAGTAATGAATGCAATCCATTATCTTCTGGTTGGAGAG
TAATTAAATGTTTAGATCCATTAAAAGAAGAGGAAGAAGATTTACAAAATGAACAAATTG
AGGATAAAGTCAAGAGTTACATCAACAAAATGTAATTGAAAAACCACTTGATGATTG---
-------
Length of 5' end seq. 477
3' end seq. ID AFK790Z
3' end seq. 
>AFK790Z.Seq
----------GTATTAATGAGGAAGAAATAATATCAGGTGTAATTATTCCAGATGATAAA
AGTAATAAATTTCAATCATGTACTTTATTCATTGATGAAGAATCAATTTATACAAAAAAA
GATAAAAAATCATCAAATAAAAACAATAATAATAATGAAGAATCAGATTTAAATCAAAGT
ATTTTAAAGAAATATCAAGGTATAGAGAATACATTTGGTGATGAAAGTGCAGAATGGTCA
GATGAAACCTATGAATATGTAAAAGATCGTGTTTTTAGTAAATTCATTAAAAAGATNTCA
TTTGCACCTGACCAATGTTTACGTTATTCATATGGTGGTAAACCATTACCAATGACTGCA
NAGGGTGTAAAATTATTAACATTCAACCAAATTAATAATTTACCNCCACATTGCTCAATT
TGTAATTCTGTTAAAGTATTTGAATTTCAAATTTTGTCAACTTTAATAGCTCAAATTAAG
TTAAGAGATCCTTTAGATCCAAAAAAGAATCAATTAGAGTTTAGTAATGCTTTCATTTAC
ACTTGNCCAAATAATTGTTTTGATAAACAAAAAGATACTTTTAATAATGTTATTTATAAT
GAAGAAACTATTAAAATNAAAAAAGTATTTAAAAAAAAAAAAATTAAATAAAATACAAAT
TTTAAAAA
Length of 3' end seq. 658
Connected seq. ID AFK790P
Connected seq. 
>AFK790P.Seq
ACAAAAATATTATTCTATTGTAATTCAATTTAAAAATATATTTATATAATATGTCAATTA
AAAATGATACAAAAACATTCTTAGGATTTATTGATGAACCAATTGATAGTTTAAAAATAA
ATAAAGAAGAGGAAGAAGAGGGTGATTACCCTTATTCAACAAAAATTGGTGGATCACCTA
TATGGTGTGCTCAACCACCAAATCATTTAAAAGATTTAAAATGTAATATGTGTAGTTCAA
ATTTATCATTTTTATTACAAGCATATTGTCCATTAAATTCACTTCCAGATTATGAAAGAA
ATTTCTACGTTTTTGTTTGTCCAAGTAATGAATGCAATCCATTATCTTCTGGTTGGAGAG
TAATTAAATGTTTAGATCCATTAAAAGAAGAGGAAGAAGATTTACAAAATGAACAAATTG
AGGATAAAGTCAAGAGTTACATCAACAAAATGTAATTGAAAAACCACTTGATGATTG---
-------GTATTAATGAGGAAGAAATAATATCAGGTGTAATTATTCCAGATGATAAAAGT
AATAAATTTCAATCATGTACTTTATTCATTGATGAAGAATCAATTTATACAAAAAAAGAT
AAAAAATCATCAAATAAAAACAATAATAATAATGAAGAATCAGATTTAAATCAAAGTATT
TTAAAGAAATATCAAGGTATAGAGAATACATTTGGTGATGAAAGTGCAGAATGGTCAGAT
GAAACCTATGAATATGTAAAAGATCGTGTTTTTAGTAAATTCATTAAAAAGATNTCATTT
GCACCTGACCAATGTTTACGTTATTCATATGGTGGTAAACCATTACCAATGACTGCANAG
GGTGTAAAATTATTAACATTCAACCAAATTAATAATTTACCNCCACATTGCTCAATTTGT
AATTCTGTTAAAGTATTTGAATTTCAAATTTTGTCAACTTTAATAGCTCAAATTAAGTTA
AGAGATCCTTTAGATCCAAAAAAGAATCAATTAGAGTTTAGTAATGCTTTCATTTACACT
TGNCCAAATAATTGTTTTGATAAACAAAAAGATACTTTTAATAATGTTATTTATAATGAA
GAAACTATTAAAATNAAAAAAGTATTTAAAAAAAAAAAAATTAAATAAAATACAAATTTT
AAAAA
Length of connected seq. 1135
Full length Seq ID -
Full length Seq. -
Length of full length seq. -