>SSB882 (SSB882Q) /CSM/SS/SSB8-D/SSB882Q.Seq.d/
XXXXXXXXXXCGTCAGTCATTTTGCACGTTTTATGGCCACTTTTCAAAGTGGTAGTAAAT
CACATAAAGCAGTCAAAGAGAATCACATCAAAATCATGAAAATTTACTATGGAAATAAAT
ACTTTTTAGCTTTTATGTGTTTTGGTAATGAAGGTTTCTTCCTTNTCTCTTACCTCTATC
ACTTTTATGCAACTTCCTCTGTTTTCTACATCCTTTGGGGTTTCTTTTTCCCAATTTGTG
CTGCCAAACAAATCATCAATGCAATTCAATTTTTCCAAGCTGTTGATGATATCGTTTCTT
TAGATGACCAACAAAAATTAAAAAAATAGATTAGAAATTAATTATAAATATAAAAATAAA
AAAAAAAATAAAAAAAAAAAATTTTTAAA

---VSHFARFMATFQSGSKSHKAVKENHIKIMKIYYGNKYFLAFMCFGNEGFFLXSYLYH
FYATSSVFYILWGFFFPICAAKQIINAIQFFQAVDDIVSLDDQQKLKK*irn*l*i*k*k
kk*kkkifk

Frame A:
---VSHFARFMATFQSGSKSHKAVKENHIKIMKIYYGNKYFLAFMCFGNEGFFLXSYLYH
FYATSSVFYILWGFFFPICAAKQIINAIQFFQAVDDIVSLDDQQKLKK*irn*l*i*k*k
kk*kkkifk


Frame B:
---svilhvlwplfkvvvnhikqskritsks*kftmeintf*llcvlvmkvssxsltsit
fmqlplfstsfgvsfsqfvlpnkssmqfnfskllmisfl*mtnkn*knrleinykyknkk
knkkkkfl


Frame C:
---qsfctfyghfskw**it*ssqreshqnhenllwk*ilfsfyvfw**rflpxllplsl
lcnflcflhplgflfpnlccqtnhqcnsifpsc**yrffr*ptkikkid*kliinikikk
kikkknf*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB882 (SSB882Q) /CSM/SS/SSB8-D/SSB882Q.Seq.d/                        593   e-169
SSE755 (SSE755Q) /CSM/SS/SSE7-C/SSE755Q.Seq.d/                        555   e-157
SSI644 (SSI644Q) /CSM/SS/SSI6-B/SSI644Q.Seq.d/                        509   e-144
SHL407 (SHL407Q) /CSM/SH/SHL4-A/SHL407Q.Seq.d/                        394   e-109
VSB185 (VSB185Q) /CSM/VS/VSB1-D/VSB185Q.Seq.d/                        204   7e-52
VSJ168 (VSJ168Q) /CSM/VS/VSJ1-C/VSJ168Q.Seq.d/                         34   1.5
VSI368 (VSI368Q) /CSM/VS/VSI3-C/VSI368Q.Seq.d/                         34   1.5
VSE121 (VSE121Q) /CSM/VS/VSE1-A/VSE121Q.Seq.d/                         34   1.5
VSA759 (VSA759Q) /CSM/VS/VSA7-C/VSA759Q.Seq.d/                         34   1.5
VHL194 (VHL194Q) /CSM/VH/VHL1-D/VHL194Q.Seq.d/                         34   1.5

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BZ957875|BZ957875.1 PgH007D18d Panax ginseng BAC library (PgH BAC) Panax ginseng genomic clone PgH007D18, DNA sequence.    36  1.7  2
BX193436|BX193436.1 Danio rerio genomic clone DKEY-199J20, genomic survey sequence.    36  2.4  2
AC019176|AC019176.4 Homo sapiens BAC clone RP11-221H10 from 8, complete sequence.    32  2.8  5
AC126713|AC126713.4 Rattus norvegicus clone CH230-5L14, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  2.8  5
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    32  3.1  7
AC084570|AC084570.1 Caenorhabditis briggsae cosmid G39C06, complete sequence.    34  3.8  3
AC145218|AC145218.3 Medicago truncatula clone mth2-34l18, WORKING DRAFT SEQUENCE, 13 unordered pieces.    42  4.6  2
AP005090|AP005090.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04, WORKING DRAFT SEQUENCE, 1 ordered pieces.    42  4.9  1
BX539340|BX539340.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-57K2.    42  4.9  1
AC024249|AC024249.3 Homo sapiens chromosome 8 clone RP11-661A3, WORKING DRAFT SEQUENCE, 40 unordered pieces.    42  4.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY815665_1(AY815665|pid:none) Schistosoma japonicum SJCHGC02164 ...    69   5e-11
BT076475_1(BT076475|pid:none) Caligus rogercresseyi clone crog-e...    67   1e-10
BC068701_1(BC068701|pid:none) Xenopus laevis hypothetical protei...    59   4e-08
BC121479_1(BC121479|pid:none) Xenopus tropicalis CDP-diacylglyce...    59   4e-08
CR382135_374(CR382135|pid:none) Debaryomyces hansenii strain CBS...    59   5e-08
AJ238318_1(AJ238318|pid:none) Oryza sativa mRNA for phosphatidyl...    58   1e-07
AL110485_6(AL110485|pid:none) Caenorhabditis elegans YAC Y46G5A,...    57   2e-07
BT078056_1(BT078056|pid:none) Lepeophtheirus salmonis clone lsal...    57   3e-07
AM494963_241(AM494963|pid:none) Leishmania braziliensis chromoso...    55   1e-06
BT075995_1(BT075995|pid:none) Caligus rogercresseyi clone crog-e...    54   1e-06

 psg: 0.87  gvh: 0.46  alm: 0.34  top: 0.70  tms: 0.00  mit: 0.39  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 12.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSB882 is mit

>SSB882Z.Seq
----------CGTCAGTCATTTTGCACGTTTTATGGCCACTTTTCAAAGTGGTAGTAAAT
CACATAAAGCAGTCAAAGAGAATCACATCAAAATCATGAAAATTTACTATGGAAATAAAT
ACTTTTTAGCTTTTATGTGTTTTGGTAATGAAGGTTTCTTCCTTNTCTCTTACCTCTATC
ACTTTTATGCAACTTCCTCTGTTTTCTACATCCTTTGGGGTTTCTTTTTCCCAATTTGTG
CTGCCAAACAAATCATCAATGCAATTCAATTTTTCCAAGCTGTTGATGATATCGTTTCTT
TAGATGACCAACAAAAATTAAAAAAATAGATTAGAAATTAATTATAAATATAAAAATAAA
AAAAAAAATAAAAAAAAAAAATTTTTAAA