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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB881
Library SS
(Link to library)
Clone ID SSB881
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10251-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SSB881 (SSB881Q) /CSM/SS/SSB8-D/SSB881Q.Seq.d/
GAATCCCCATTCACCAANTCATGATGCTTCATACTCAACTGCCGTCAAAAAAGTTAAGGC
TCAAGAACAATCAGTCCTTGCTGAATTCTTAAATGATATTAAAANTGGTATCAAAAATCA
AACTGCCGTTTGGGAAACTAAAGAATTTAGAGATAAATACTTAACTCTTGATGAATCAAA
GAATTAAATTAAATCNNNNNNNNNNNNNGNNNTNATAATAATAATAATAATAATAATTAA
TATCGCCTATTTTCCTCTAACTTTAAAATCTCAAAAAAAAAAAAAAAAAAGTNATATATA
ATATAAATAATTTTTTTTCCTGAAAAAAAA
sequence update 1998. 5.31
Translated Amino Acid sequence 
NPHSPXHDASYSTAVKKVKAQEQSVLAEFLNDIKXGIKNQTAVWETKEFRDKYLTLDESK
N*iksxxxxxxiiiiiiiiniayfpltlksqkkkkksxi*yk*ffflkk
Translated Amino Acid sequence (All Frames) 
Frame A:
espftxs*cfilncrqks*gsrtispc*ilk*y*xwyqksncrlgn*ri*r*ilns**ik
eln*ixxxxxxxnnnnnnn*yrlfssnfkiskkkkkkxyii*iiffpekk


Frame B:
NPHSPXHDASYSTAVKKVKAQEQSVLAEFLNDIKXGIKNQTAVWETKEFRDKYLTLDESK
N*iksxxxxxxiiiiiiiiniayfpltlksqkkkkksxi*yk*ffflkk


Frame C:
ipihqxmmlhtqlpskklrlknnqsllns*milkxvskiklpfgklknleint*llmnqr
iklnxxxxxxx*******lispifl*l*nlkkkkkkviyninnffs*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB881 (SSB881Q) /CSM/SS/SSB8-D/SSB881Q.Seq.d/                        375   e-103
VSF112 (VSF112Q) /CSM/VS/VSF1-A/VSF112Q.Seq.d/                        349   2e-95
VFM226 (VFM226Q) /CSM/VF/VFM2-B/VFM226Q.Seq.d/                        349   2e-95
SSI203 (SSI203Q) /CSM/SS/SSI2-A/SSI203Q.Seq.d/                        349   2e-95
SSC837 (SSC837Q) /CSM/SS/SSC8-B/SSC837Q.Seq.d/                        349   2e-95
SSF214 (SSF214Q) /CSM/SS/SSF2-A/SSF214Q.Seq.d/                        347   6e-95
SSB786 (SSB786Q) /CSM/SS/SSB7-D/SSB786Q.Seq.d/                        341   4e-93
VFK444 (VFK444Q) /CSM/VF/VFK4-B/VFK444Q.Seq.d/                        313   9e-85
SSA264 (SSA264Q) /CSM/SS/SSA2-C/SSA264Q.Seq.d/                        309   1e-83
VFJ265 (VFJ265Q) /CSM/VF/VFJ2-C/VFJ265Q.Seq.d/                        274   8e-73
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE015906|AE015906.1 Shewanella oneidensis MR-1 section 455 of 457 of the complete genome.    40  0.11  2
AC102845|AC102845.2 Mus musculus clone RP24-389O7, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  0.28  2
AL954734|AL954734.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40  0.35  5
AL765236|AL765236.1 Arabidopsis thaliana T-DNA flanking sequence GK-136F09-012801.    44  1.0  1
BH904566|BH904566.1 SALK_104671.47.25.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_104671.47.25.x, DNA sequence.    44  1.0  1
BZ763903|BZ763903.1 SALK_122680.55.00.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_122680.55.00.x, DNA sequence.    44  1.0  1
BH851247|BH851247.1 SALK_072732.43.85.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_072732.43.85.x, DNA sequence.    44  1.0  1
AB016870|AB016870.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15I22.    44  1.9  2
AL157812|AL157812.5 Human DNA sequence from clone RP11-14B2 on chromosome 13.    32  3.2  6
CF036706|CF036706.1 QCG35e12.yg QCG Zea mays cDNA clone QCG35e12, mRNA sequence.    42  4.1  1
dna update 2003. 7.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RA8) RecName: Full=ATP synthase subunit O, mitochondrial; Al...   109   2e-23
CR936503_133(CR936503|pid:none) Lactobacillus sakei strain 23K c...    32   5.0
AM285308_38(AM285308|pid:none) Spiroplasma citri GII3-3X chromos...    32   8.5
protein update 2008.12. 2
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSB881 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB881Z
3' end seq. 
>SSB881Z.Seq
XXXXXXXXXXGAATCCCCATTCACCAANTCATGATGCTTCATACTCAACTGCCGTCAAAA
AAGTTAAGGCTCAAGAACAATCAGTCCTTGCTGAATTCTTAAATGATATTAAAANTGGTA
TCAAAAATCAAACTGCCGTTTGGGAAACTAAAGAATTTAGAGATAAATACTTAACTCTTG
ATGAATCAAAGAATTAAATTAAATCNNNNNNNNNNNNNGNNNTNATAATAATAATAATAA
TAATAATTAATATCGCCTATTTTCCTCTAACTTTAAAATCTCAAAAAAAAAAAAAAAAAA
GTNATATATAATATAAATAATTTTTTTTCCTGAAAAAAAA
Length of 3' end seq. 340
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -