NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB879
Library SS
(Link to library)
Clone ID SSB879
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSB879P
(Link to Original site)
Representative DNA sequence 
>SSB879 (SSB879Q) /CSM/SS/SSB8-D/SSB879Q.Seq.d/
ATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATTAGTATTTTTGATTTCAGTTAT
TTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAAATTCAATGAATTATCAATTGG
TGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGGAACAACATTAAATATTACATT
TGATTTTACAACATCATATGCACAAAATACACAATTTGCTGCACAAATTTTAACATATGG
TTATAATCCATCATCAATGACCAATTTAGGAAGTGTATTTGATCCAACCAATGTAAAGAC
AGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATATTGGTAATATTCAAGCAAATGG
TGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCCAAATATTAAAGATGATGCCAA
TTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAGTTATGATTGTTCAGATCCAAG
TAAATCAGTAATTGGTGATATGATTAGTTTTTGTACTATTGGTGTTGGTAATATCGATTA
TTCATCATTTGATAAATCTAAATTAACAGGTGTCAACACTGCATCATCCTATTCAAATTT
AGAGAATGCAATTGGTTTAGCAGTAGTTTACAATACTACCATCACCAAAGGTGATTACAT
TGAAGGTAGAGTTTTATTCAAAGCACTCAATTCTTCATTCATTCAAGTATCTGCTAAAGT
TXXXXXXXXXXATTAAACTGCCCTCNACTACAGTATAACATTTGNGTGTGTGTGTGNATG
TATGCGGAGNNCCCAAAACCTCCCAATANTAAAANTGGGGTGATAATGANAATCAAATGG
AAAACCGAAGAACTTAGGTGTCCAAAGATTTACATGCTCAAGATGTTTAGGTGGTGAAGT
TTCAGATTGTTGTGATTCCTTATGAATTTTGTATTTCATGTTGTATGAGACAAGACAAAG
TTTCAATACTGCATGATACATTAATTAATTCCGCTGAAAAGAATTTAGATAAGAAATATT
TAAAGAATCAATTCGACCTTTGTTCAATGGCATGCAGAACTTCTTCCGCCTCTTTAGTGA
ATCAACGTGAATACCAAGATCCAGAATTTAAATTTTGTTATTCTTCAAAAATACCTCAAC
CTTTTAATTTGTAATTTAGTCTTAAAATATTAATAATATTATTAAGGTTCAAAAATAAGA
ATTTGGACTTTTAAATAAAAAAATAAAAAATAAAAATAAATTTTTTTTCAGTTGTAAAAA
AAA
sequence update 1998. 7.29
Translated Amino Acid sequence 
fisk*KMRLLSVLVFLISVISIAKADYQYAFCKFNELSIGGVEGIAHLLSTDGTTLNITF
DFTTSYAQNTQFAAQILTYGYNPSSMTNLGSVFDPTNVKTAGCPSGTPRAGDIGNIQANG
GNVEAQTISLNIPNIKDDANSIIGRSIAIYGGSYDCSDPSKSVIGDMISFCTIGVGNIDY
SSFDKSKLTGVNTASSYSNLENAIGLAVVYNTTITKGDYIEGRVLFKALNSSFIQVSAKV
---

---LNCPXLQYNIXVCVXMYAEXPKPPNXKXGVIMXIKWKTEELRCPKIYMLKMFRW*sf
rll*flmnfvfhvv*dktkfqycmih*liplkri*irni*rinstfvqwhaellppl**i
nvntkiqnlnfvilqkylnllicnlvlky**yy*gskiriwtfk*knkk*k*iffql*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
iylkiknetficisifdfsyfhcksrlpicfl*iq*iinwwc*rycssfky*wnnikyyi
*fyniictkyticctnfniwl*siindqfrkci*snqckdsrmskwnttcr*yw*ysskw
w*c*stnnfikhsky*r*cqfnywsfncnlww*l*lfrsk*isnw*yd*flyywcw*yrl
fii**i*inrcqhciilfkfrecnwfssslqyyhhqr*lh*r*sfiqstqffihssic*s
---

---iklpsttv*hlxvcvxvcgxpktsqx*xwgdnxnqmenrrt*vskdlhaqdv*vvkf
qivvipyefcisccmrqdkvsilhdtlinsaeknldkkylknqfdlcsmacrtssaslvn
qreyqdpefkfcysskipqpfnl*fslkiliillrfknknldf*ikk*kikinffsvvkk

Frame B:
fisk*KMRLLSVLVFLISVISIAKADYQYAFCKFNELSIGGVEGIAHLLSTDGTTLNITF
DFTTSYAQNTQFAAQILTYGYNPSSMTNLGSVFDPTNVKTAGCPSGTPRAGDIGNIQANG
GNVEAQTISLNIPNIKDDANSIIGRSIAIYGGSYDCSDPSKSVIGDMISFCTIGVGNIDY
SSFDKSKLTGVNTASSYSNLENAIGLAVVYNTTITKGDYIEGRVLFKALNSSFIQVSAKV
---

---LNCPXLQYNIXVCVXMYAEXPKPPNXKXGVIMXIKWKTEELRCPKIYMLKMFRW*sf
rll*flmnfvfhvv*dktkfqycmih*liplkri*irni*rinstfvqwhaellppl**i
nvntkiqnlnfvilqkylnllicnlvlky**yy*gskiriwtfk*knkk*k*iffql*kk

Frame C:
lsqnkk*dfyly*yf*fqlfplqkpitnmlfvnsmnyqlvvlkvllif*vlmeqh*ilhl
ilqhhmhkihnllhkf*hmviihhq*pi*evyliqpm*rqqdvqvehhvqvilvifkqmv
vmlkhkqfh*tfqilkmmpiqllvvqlqsmvvvmivqiqvnq*lvi*lvfvllvlvisii
hhlinln*qvstlhhpiqi*rmqlv*q*ftilpspkvitlkvefyskhsilhsfkyllk-
--

---*talxysitfxcvcxcmrxxqnlpixkxg***xsngkpknlgvqrftcsrclggevs
dccdsl*ilyfmlyetrqsfnta*yin*fr*kefr*eifkesirplfngmqnffrlfses
t*iprsri*illffkntstf*fvi*s*ninniikvqk*efgllnkkiknknkfffsckk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB879 (SSB879Q) /CSM/SS/SSB8-D/SSB879Q.Seq.d/                       1449   0.0
VHK773 (VHK773Q) /CSM/VH/VHK7-D/VHK773Q.Seq.d/                       1429   0.0
VFO783 (VFO783Q) /CSM/VF/VFO7-D/VFO783Q.Seq.d/                       1429   0.0
VFN527 (VFN527Q) /CSM/VF/VFN5-B/VFN527Q.Seq.d/                       1429   0.0
VFM834 (VFM834Q) /CSM/VF/VFM8-B/VFM834Q.Seq.d/                       1429   0.0
VFM189 (VFM189Q) /CSM/VF/VFM1-D/VFM189Q.Seq.d/                       1429   0.0
VFL780 (VFL780Q) /CSM/VF/VFL7-D/VFL780Q.Seq.d/                       1429   0.0
VFL752 (VFL752Q) /CSM/VF/VFL7-C/VFL752Q.Seq.d/                       1429   0.0
VFL312 (VFL312Q) /CSM/VF/VFL3-A/VFL312Q.Seq.d/                       1429   0.0
VFL248 (VFL248Q) /CSM/VF/VFL2-B/VFL248Q.Seq.d/                       1429   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   573  0.0  8
AI733638|AI733638.1 ov20a05.x5 NCI_CGAP_Br2 Homo sapiens cDNA clone IMAGE:1637840 3', mRNA sequence.    34  0.045  3
AI075326|AI075326.1 ov20a05.x1 NCI_CGAP_Br2 Homo sapiens cDNA clone IMAGE:1637840 3', mRNA sequence.    34  0.045  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  0.062  11
AC122309|AC122309.3 Mus musculus chromosome UNK clone RP23-293G2, WORKING DRAFT SEQUENCE, 7 unordered pieces.    40  0.25  6
BQ515038|BQ515038.1 EST622453 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIP71 3' end, mRNA sequence.    48  0.27  1
BQ515037|BQ515037.1 EST622452 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIP71 5' end, mRNA sequence.    48  0.27  1
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38  0.33  10
AL954337|AL954337.9 Zebrafish DNA sequence from clone CH211-223J10 in linkage group 19.    34  0.52  9
AC079079|AC079079.3 Homo sapiens chromosome 6 clone RP11-106M1, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  0.58  3
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RQ1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   435   e-120
(Q54RN1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   125   4e-27
DQ440326_1(DQ440326|pid:none) Aedes aegypti clone AET-4200 uncha...    60   2e-07
AX119201_1(AX119201|pid:none) Sequence 365 from Patent WO0129221.      59   4e-07
(Q8BTG6) RecName: Full=UPF0454 protein C12orf49 homolog; Flags: ...    59   5e-07
(Q6GNT2) RecName: Full=UPF0454 protein C12orf49 homolog; Flags: ...    54   9e-06
AE014298_2266(AE014298|pid:none) Drosophila melanogaster chromos...    52   6e-05
(Q8J0N2) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...    49   3e-04
BT055363_1(BT055363|pid:none) Zea mays full-length cDNA clone ZM...    49   5e-04
(Q96VL0) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...    48   8e-04
protein update 2009. 6. 9
PSORT 

 psg: 0.98  gvh: 0.75  alm: 0.39  top: 0.33  tms: 0.00  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SSB879 is exc
5' end seq. ID SSB879F
5' end seq. 
>SSB879F.Seq
ATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATTAGTATTTTTGATTTCAGTTAT
TTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAAATTCAATGAATTATCAATTGG
TGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGGAACAACATTAAATATTACATT
TGATTTTACAACATCATATGCACAAAATACACAATTTGCTGCACAAATTTTAACATATGG
TTATAATCCATCATCAATGACCAATTTAGGAAGTGTATTTGATCCAACCAATGTAAAGAC
AGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATATTGGTAATATTCAAGCAAATGG
TGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCCAAATATTAAAGATGATGCCAA
TTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAGTTATGATTGTTCAGATCCAAG
TAAATCAGTAATTGGTGATATGATTAGTTTTTGTACTATTGGTGTTGGTAATATCGATTA
TTCATCATTTGATAAATCTAAATTAACAGGTGTCAACACTGCATCATCCTATTCAAATTT
AGAGAATGCAATTGGTTTAGCAGTAGTTTACAATACTACCATCACCAAAGGTGATTACAT
TGAAGGTAGAGTTTTATTCAAAGCACTCAATTCTTCATTCATTCAAGTATCTGCTAAAGT
T----------
Length of 5' end seq. 721
3' end seq. ID SSB879Z
3' end seq. 
>SSB879Z.Seq
----------ATTAAACTGCCCTCNACTACAGTATAACATTTGNGTGTGTGTGTGNATGT
ATGCGGAGNNCCCAAAACCTCCCAATANTAAAANTGGGGTGATAATGANAATCAAATGGA
AAACCGAAGAACTTAGGTGTCCAAAGATTTACATGCTCAAGATGTTTAGGTGGTGAAGTT
TCAGATTGTTGTGATTCCTTATGAATTTTGTATTTCATGTTGTATGAGACAAGACAAAGT
TTCAATACTGCATGATACATTAATTAATTCCGCTGAAAAGAATTTAGATAAGAAATATTT
AAAGAATCAATTCGACCTTTGTTCAATGGCATGCAGAACTTCTTCCGCCTCTTTAGTGAA
TCAACGTGAATACCAAGATCCAGAATTTAAATTTTGTTATTCTTCAAAAATACCTCAACC
TTTTAATTTGTAATTTAGTCTTAAAATATTAATAATATTATTAAGGTTCAAAAATAAGAA
TTTGGACTTTTAAATAAAAAAATAAAAAATAAAAATAAATTTTTTTTCAGTTGTAAAAAA
AA
Length of 3' end seq. 532
Connected seq. ID SSB879P
Connected seq. 
>SSB879P.Seq
ATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATTAGTATTTTTGATTTCAGTTAT
TTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAAATTCAATGAATTATCAATTGG
TGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGGAACAACATTAAATATTACATT
TGATTTTACAACATCATATGCACAAAATACACAATTTGCTGCACAAATTTTAACATATGG
TTATAATCCATCATCAATGACCAATTTAGGAAGTGTATTTGATCCAACCAATGTAAAGAC
AGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATATTGGTAATATTCAAGCAAATGG
TGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCCAAATATTAAAGATGATGCCAA
TTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAGTTATGATTGTTCAGATCCAAG
TAAATCAGTAATTGGTGATATGATTAGTTTTTGTACTATTGGTGTTGGTAATATCGATTA
TTCATCATTTGATAAATCTAAATTAACAGGTGTCAACACTGCATCATCCTATTCAAATTT
AGAGAATGCAATTGGTTTAGCAGTAGTTTACAATACTACCATCACCAAAGGTGATTACAT
TGAAGGTAGAGTTTTATTCAAAGCACTCAATTCTTCATTCATTCAAGTATCTGCTAAAGT
T----------ATTAAACTGCCCTCNACTACAGTATAACATTTGNGTGTGTGTGTGNATG
TATGCGGAGNNCCCAAAACCTCCCAATANTAAAANTGGGGTGATAATGANAATCAAATGG
AAAACCGAAGAACTTAGGTGTCCAAAGATTTACATGCTCAAGATGTTTAGGTGGTGAAGT
TTCAGATTGTTGTGATTCCTTATGAATTTTGTATTTCATGTTGTATGAGACAAGACAAAG
TTTCAATACTGCATGATACATTAATTAATTCCGCTGAAAAGAATTTAGATAAGAAATATT
TAAAGAATCAATTCGACCTTTGTTCAATGGCATGCAGAACTTCTTCCGCCTCTTTAGTGA
ATCAACGTGAATACCAAGATCCAGAATTTAAATTTTGTTATTCTTCAAAAATACCTCAAC
CTTTTAATTTGTAATTTAGTCTTAAAATATTAATAATATTATTAAGGTTCAAAAATAAGA
ATTTGGACTTTTAAATAAAAAAATAAAAAATAAAAATAAATTTTTTTTCAGTTGTAAAAA
AAA
Length of connected seq. 1253
Full length Seq ID -
Full length Seq. -
Length of full length seq. -