>SSB877 (SSB877Q) /CSM/SS/SSB8-D/SSB877Q.Seq.d/
CGAACAAAGTTCTCATGGTGGTGCTGGTGGTGCTTATCAACAACATGGTGGTGCTTATGG
TCATCAAAAACAATNNNAACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAATTTGGTGG
TGGTGGTCCACAACAAGCACAACAGTGTCAACAACAATAAACAATTTAAAAAAAAAAAAA
ACTAAAAATATCCAAAAATATCAAAATACCCAAAAATCTAAAATTAAAAAAAAAAAAAAA
AAAATTTCCAAAACTATTATTAAATAAATTTATATAATAATTTTTTCGTTGTACATTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX

NKVLMVVLVVLINNMVVLMVIKNNXNKVLILLILVLNLVVVVHNKHNSVNNNKQFKKKKN
*kypkiskypki*n*kkkkknfqnyy*inlynnffvvhlkkkkkkkkkk---

Frame A:
rtkfswwcwwclsttwwclwssktxxtrf*sc*fwcsiwwwwsttsttvsttinnlkkkk
tkniqkyqntqkskikkkkkkisktiik*iyiiifslyi*kkkkkkkkkk---


Frame B:
eqsshggaggayqqhggayghqkqxxqgfnpadfgaqfggggpqqaqqcqqq*ti*kkkk
lkisknikipknlklkkkkkkfpklllnkfi**ffrctfkkkkkkkkkk---


Frame C:
NKVLMVVLVVLINNMVVLMVIKNNXNKVLILLILVLNLVVVVHNKHNSVNNNKQFKKKKN
*kypkiskypki*n*kkkkknfqnyy*inlynnffvvhlkkkkkkkkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB877 (SSB877Q) /CSM/SS/SSB8-D/SSB877Q.Seq.d/                        313   9e-85
VSK150 (VSK150Q) /CSM/VS/VSK1-C/VSK150Q.Seq.d/                        305   2e-82
SLK513 (SLK513Q) /CSM/SL/SLK5-A/SLK513Q.Seq.d/                        305   2e-82
SLJ808 (SLJ808Q) /CSM/SL/SLJ8-A/SLJ808Q.Seq.d/                        305   2e-82
SLJ243 (SLJ243Q) /CSM/SL/SLJ2-B/SLJ243Q.Seq.d/                        305   2e-82
SLJ110 (SLJ110Q) /CSM/SL/SLJ1-A/SLJ110Q.Seq.d/                        305   2e-82
SLI420 (SLI420Q) /CSM/SL/SLI4-A/SLI420Q.Seq.d/                        305   2e-82
SLI160 (SLI160Q) /CSM/SL/SLI1-C/SLI160Q.Seq.d/                        305   2e-82
SLH286 (SLH286Q) /CSM/SL/SLH2-D/SLH286Q.Seq.d/                        305   2e-82
SLG441 (SLG441Q) /CSM/SL/SLG4-B/SLG441Q.Seq.d/                        305   2e-82

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX347184|AX347184.1 Sequence 2255 from Patent WO0200928.          54  0.001  1
AC109830|AC109830.5 Homo sapiens BAC clone RP11-1226B8 from 4, complete sequence.    40  0.017  3
AC027655|AC027655.3 Mus musculus chromosome 6 clone RP23-318M11 strain C57BL6/J, WORKING DRAFT SEQUENCE, 9 ordered pieces.    42  0.045  4
BH009488|BH009488.1 ef29e01.x1 TO1000 Brassica oleracea genomic clone ef29e01 5', DNA sequence.    48  0.069  1
BH982032|BH982032.1 ode08g11.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    48  0.069  1
BH645260|BH645260.1 BOHYS73TF BO_2_3_KB Brassica oleracea genomic clone BOHYS73, DNA sequence.    48  0.069  1
BH008019|BH008019.1 ee77g10.x1 TO1000 Brassica oleracea genomic clone ee77g10 5', DNA sequence.    48  0.069  1
BH008020|BH008020.1 ee77g10.x2 TO1000 Brassica oleracea genomic clone ee77g10 5', DNA sequence.    48  0.069  1
AC016668|AC016668.4 Homo sapiens clone RP11-11G15, WORKING DRAFT SEQUENCE, 29 unordered pieces.    46  0.100  2
AX346016|AX346016.1 Sequence 1087 from Patent WO0200928.          34  0.11  3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 58,688,888

 psg: 0.99  gvh: 0.55  alm: 0.16  top: 0.53  tms: 0.13  mit: 0.39  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: nuclear
	  4.0 %: peroxisomal
	  4.0 %: cytoplasmic

>> prediction for SSB877 is end

>SSB877F.Seq
CGAACAAAGTTCTCATGGTGGTGCTGGTGGTGCTTATCAACAACATGGTGGTGCTTATGG
TCATCAAAAACAATNNNAACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAATTTGGTGG
TGGTGGTCCACAACAAGCACAACAGTGTCAACAACAATAAACAATTTAAAAAAAAAAAAA
ACTAAAAATATCCAAAAATATCAAAATACCCAAAAATCTAAAATTAAAAAAAAAAAAAAA
AAAATTTCCAAAACTATTATTAAATAAATTTATATAATAATTTTTTCGTTGTACATTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------