>SSB867 (SSB867Q) /CSM/SS/SSB8-C/SSB867Q.Seq.d/
XXXXXXXXXXTCCCATAATAGTTCCAACCCTATCATCTGGTCCTATTATGGCCAAAATGT
CTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATG
ATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATA
AAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGA
TCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGG
ATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATG
GTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATT
AAAAAAATAAAAATAAAAATAATAATTTCTAATTGTAAA

---PIIVPTLSSGPIMAKMSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNK
VESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iyg
skmnrrmfgsi**pemffy*knknknnnf*l*

Frame A:
---PIIVPTLSSGPIMAKMSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNK
VESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iyg
skmnrrmfgsi**pemffy*knknknnnf*l*


Frame B:
---p**fqpyhlvllwpkclqlnwimvf*llvmvfkvkmmkvqy*tenkpllstrmkiik
lnplmihlivldqrqiiigslkihgvphgv*kvtf*cqrieriivvlhqlalihlprfmv
pk*igecldlssnlkcfsikkikikiiisnck


Frame C:
---hnssnpiiwsyygqnvsn*igswcfscwlwcsr*r**rssikqktnhcypqe*r**s
*il**fi**c*tkgk*lldr*kfmgylmgykrlhfnvkg*ke*lwycis*llstcldlwf
qne*envwiylvt*nvfllkk*k*k**fliv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB867 (SSB867Q) /CSM/SS/SSB8-C/SSB867Q.Seq.d/                        813   0.0
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        728   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        728   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        728   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        728   0.0
SSK727 (SSK727Q) /CSM/SS/SSK7-B/SSK727Q.Seq.d/                        728   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        728   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        728   0.0
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/                        728   0.0
SSJ658 (SSJ658Q) /CSM/SS/SSJ6-C/SSJ658Q.Seq.d/                        728   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.   716  0.0  3
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   454  0.0  5
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.   172  1e-56  3
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88  4e-25  3
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    76  7e-21  2
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88  2e-20  3
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82  7e-12  1
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds.    56  1e-08  2
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46  1e-05  2
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50  0.003  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   187   7e-47
EF535003_1(EF535003|pid:none) Misgurnus mizolepis cathepsin L mR...    86   3e-16
AF358668_1(AF358668|pid:none) Oncorhynchus mykiss procathepsin L...    86   4e-16
BT058408_1(BT058408|pid:none) Salmo salar clone Contig454 Cathep...    86   4e-16
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...    86   4e-16
BT081306_1(BT081306|pid:none) Caligus clemensi clone ccle-evs-50...    86   4e-16
U61296_1(U61296|pid:none) Oncorhynchus mykiss cathepsin L mRNA, ...    86   4e-16
AB081845_1(AB081845|pid:none) Engraulis japonicus aCatL mRNA for...    86   5e-16
BT074607_1(BT074607|pid:none) Osmerus mordax clone omor-rgc-519-...    85   7e-16
FJ772427_1(FJ772427|pid:none) Lutjanus argentimaculatus cathepsi...    85   9e-16

 psg: 0.90  gvh: 0.55  alm: 0.47  top: 0.43  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSB867 is cyt

>SSB867Z.Seq
----------
TCCCATAATAGTTCCAACCCTATCATCTGGTCCTATTATGGCCAAAATG
TCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGAT
GATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAAT
AAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGG
ATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAG
GATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTAT
GGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTAT
TAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTAAA