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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB865
Library SS
(Link to library)
Clone ID SSB865
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13886-1
Original site URL
Representative seq. ID SSB865P
(Link to Original site)
Representative DNA sequence 
>SSB865 (SSB865Q) /CSM/SS/SSB8-C/SSB865Q.Seq.d/
CGATTTTCAGTGCAGCAATATTCATTTTCATTCAATTGGTATTATTGATAGAATGTGCCT
ACTCTTTGAACGAGAGTTGTGTTAGAAAGATTGAAGATGAGGGACACAGTGGAAAGAAAT
GGTATGTATTGTTGTGTGTACTTAGTTTTGGAAGTATTGCACTTGCAGTCGCCGGTACAG
TATTGATGTTGGTATTCTATGGTAGAGGCAGTTGTTCGATCAATCAATTCTACATTGTTT
TCAATTGGGGTATTTGTTTAATCGTTGGTGTACTTTCAATTAGTGAAAAAGTTAGAGXXX
XXXXXXXACAAATTGGGCAACTATGACCAAGTACGATATCACCTCCTCTTCCACTTCCTC
TTCAAATTCTACAATTAGTGTTGATTCTGGTATGGTTTCTGTTTGGGTTAAAGTTGTTAG
TTCTTGGGTTGTAGTTTTATTATATCTTTGGACTTTAATTGGACCAATATTATTAAGAAA
TAGAGTTTGGGATTAAAAAAAAATTTAAAATAAAATAAAATAATAATATTTGTATATAAA
AAAAAATAAAAAAAGAAATAATAATAATAAATAAATAAATAAATAATAAATAAAAAATAG
ATTTAATTTTTTTAAAA
sequence update 1998. 7.29
Translated Amino Acid sequence 
IFSAAIFIFIQLVLLIECAYSLNESCVRKIEDEGHSGKKWYVLLCVLSFGSIALAVAGTV
LMLVFYGRGSCSINQFYIVFNWGICLIVGVLSISEKVR---

---TNWATMTKYDITSSSTSSSNSTISVDSGMVSVWVKVVSSWVVVLLYLWTLIGPILLR
NRVWD*kki*nkik**ylyikknkkrnnnnk*ink**iknrfnffk
Translated Amino Acid sequence (All Frames) 
Frame A:
rfsvqqysfsfnwyy**nvptl*trvvlerlkmrdtverngmyccvylvlevlhlqspvq
y*cwysmveavvrsinstlfsigvfv*slvyfqlvkkle---

---TNWATMTKYDITSSSTSSSNSTISVDSGMVSVWVKVVSSWVVVLLYLWTLIGPILLR
NRVWD*kki*nkik**ylyikknkkrnnnnk*ink**iknrfnffk

Frame B:
dfqcsnihfhsigiidrmcllferelc*kd*r*gtqwkemvcivvct*fwkyctcsrrys
idvgilw*rqlfdqsilhcfqlgylfnrwctfn**ks*---

---qigql*pstispplplplqilqlvlilvwflfglkllvlgl*fyyifgl*ldqyy*e
iefgikkkfkik*nnnici*kkikkeiiiink*innk*kidliflk

Frame C:
IFSAAIFIFIQLVLLIECAYSLNESCVRKIEDEGHSGKKWYVLLCVLSFGSIALAVAGTV
LMLVFYGRGSCSINQFYIVFNWGICLIVGVLSISEKVR---

---klgnydqvryhllfhflfkfyn*c*fwygfclg*sc*flgcsfiisldfnwtniikk
*slglkknlk*nkiiifvykkk*kkk****ink*iinkk*i*ff*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB865 (SSB865Q) /CSM/SS/SSB8-C/SSB865Q.Seq.d/                        916   0.0
SFF565 (SFF565Q) /CSM/SF/SFF5-C/SFF565Q.Seq.d/                        581   e-165
CFK103 (CFK103Q) /CSM/CF/CFK1-A/CFK103Q.Seq.d/                        581   e-165
CFF222 (CFF222Q) /CSM/CF/CFF2-A/CFF222Q.Seq.d/                        581   e-165
AFD322 (AFD322Q) /CSM/AF/AFD3-A/AFD322Q.Seq.d/                        581   e-165
AFO767 (AFO767Q) /CSM/AF/AFO7-C/AFO767Q.Seq.d/                        513   e-145
SSA539 (SSA539Q) /CSM/SS/SSA5-B/SSA539Q.Seq.d/                        462   e-129
CFI323 (CFI323Q) /CSM/CF/CFI3-A/CFI323Q.Seq.d/                        410   e-113
AFL594 (AFL594Q) /CSM/AF/AFL5-D/AFL594Q.Seq.d/                        402   e-111
AFN104 (AFN104Q) /CSM/AF/AFN1-A/AFN104Q.Seq.d/                        392   e-108
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BZ620155|BZ620155.1 ig41c07.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig41c07 5', DNA sequence.    48  0.13  1
BH784308|BH784308.1 fzmb013f020h02k0 fzmb filtered library Zea mays genomic clone fzmb013f020h02 5', DNA sequence.    48  0.13  1
BZ687602|BZ687602.1 PUBGA81TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa047M17, DNA sequence.    48  0.13  1
BZ620154|BZ620154.1 ig41c07.b1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig41c07 5', DNA sequence.    48  0.13  1
BZ616765|BZ616765.1 ig61c07.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig61c07 5', DNA sequence.    48  0.13  1
BZ616764|BZ616764.1 ig61c07.b1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig61c07 5', DNA sequence.    48  0.13  1
BZ742015|BZ742015.1 OGEBH02TC ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0223A04, DNA sequence.    46  0.50  1
CD647632|CD647632.1 AUF_108_I06_T7 Crassostrea virginica Gonad Crassostrea virginica cDNA 5' similar to adenylate kinase 7, mRNA sequence.    46  0.50  1
BZ825764|BZ825764.1 PUGDB64TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa340L08, DNA sequence.    46  0.50  1
AC100544|AC100544.1 Mus musculus clone RP23-152K20, LOW-PASS SEQUENCE SAMPLING.    40  0.52  2
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UF8) RecName: Full=Probable serine incorporator;                  192   6e-48
(A7S4N4) RecName: Full=Probable serine incorporator;                   68   2e-10
BC073465_1(BC073465|pid:none) Xenopus laevis MGC80979 protein, m...    67   5e-10
AM920427_1162(AM920427|pid:none) Penicillium chrysogenum Wiscons...    63   6e-09
AM269999_12(AM269999|pid:none) Aspergillus niger contig An02c004...    63   6e-09
(Q13530) RecName: Full=Serine incorporator 3; AltName: Full=Tumo...    61   3e-08
AY815715_1(AY815715|pid:none) Schistosoma japonicum SJCHGC06775 ...    61   3e-08
AK295120_1(AK295120|pid:none) Homo sapiens cDNA FLJ51844 complet...    61   3e-08
AK222923_1(AK222923|pid:none) Homo sapiens mRNA for tumor differ...    61   3e-08
(Q5R533) RecName: Full=Serine incorporator 3;  &CR861044_1(CR861...    61   3e-08
protein update 2009. 6. 9
PSORT 

 psg: 0.97  gvh: 0.71  alm: 0.25  top: 0.77  tms: 0.13  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSB865 is end
5' end seq. ID SSB865F
5' end seq. 
>SSB865F.Seq
CGATTTTCAGTGCAGCAATATTCATTTTCATTCAATTGGTATTATTGATAGAATGTGCCT
ACTCTTTGAACGAGAGTTGTGTTAGAAAGATTGAAGATGAGGGACACAGTGGAAAGAAAT
GGTATGTATTGTTGTGTGTACTTAGTTTTGGAAGTATTGCACTTGCAGTCGCCGGTACAG
TATTGATGTTGGTATTCTATGGTAGAGGCAGTTGTTCGATCAATCAATTCTACATTGTTT
TCAATTGGGGTATTTGTTTAATCGTTGGTGTACTTTCAATTAGTGAAAAAGTTAGAG---
-------
Length of 5' end seq. 297
3' end seq. ID SSB865Z
3' end seq. 
>SSB865Z.Seq
----------
ACAAATTGGGCAACTATGACCAAGTACGATATCACCTCCTCTTCCACTT
CCTCTTCAAATTCTACAATTAGTGTTGATTCTGGTATGGTTTCTGTTTGGGTTAAAGTTG
TTAGTTCTTGGGTTGTAGTTTTATTATATCTTTGGACTTTAATTGGACCAATATTATTAA
GAAATAGAGTTTGGGATTAAAAAAAAATTTAAAATAAAATAAAATAATAATATTTGTATA
TAAAAAAAAATAAAAAAAGAAATAATAATAATAAATAAATAAATAAATAATAAATAAAAA
ATAGATTTAATTTTTTTAAAA
Length of 3' end seq. 311
Connected seq. ID SSB865P
Connected seq. 
>SSB865P.Seq
CGATTTTCAGTGCAGCAATATTCATTTTCATTCAATTGGTATTATTGATAGAATGTGCCT
ACTCTTTGAACGAGAGTTGTGTTAGAAAGATTGAAGATGAGGGACACAGTGGAAAGAAAT
GGTATGTATTGTTGTGTGTACTTAGTTTTGGAAGTATTGCACTTGCAGTCGCCGGTACAG
TATTGATGTTGGTATTCTATGGTAGAGGCAGTTGTTCGATCAATCAATTCTACATTGTTT
TCAATTGGGGTATTTGTTTAATCGTTGGTGTACTTTCAATTAGTGAAAAAGTTAGAG---
-------ACAAATTGGGCAACTATGACCAAGTACGATATCACCTCCTCTTCCACTTCCTC
TTCAAATTCTACAATTAGTGTTGATTCTGGTATGGTTTCTGTTTGGGTTAAAGTTGTTAG
TTCTTGGGTTGTAGTTTTATTATATCTTTGGACTTTAATTGGACCAATATTATTAAGAAA
TAGAGTTTGGGATTAAAAAAAAATTTAAAATAAAATAAAATAATAATATTTGTATATAAA
AAAAAATAAAAAAAGAAATAATAATAATAAATAAATAAATAAATAATAAATAAAAAATAG
ATTTAATTTTTTTAAAA
Length of connected seq. 607
Full length Seq ID -
Full length Seq. -
Length of full length seq. -