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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB838
Library SS
(Link to library)
Clone ID SSB838
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U02939-1
Original site URL
Representative seq. ID SSB838P
(Link to Original site)
Representative DNA sequence 
>SSB838 (SSB838Q) /CSM/SS/SSB8-B/SSB838Q.Seq.d/
TAGAACTGAAATTGAATCAGTTTTAAATTTAGGTGTTGATCCAAGTCGTATTATTTATGC
TAATCCATGTAAACAAATCTCTGCTCTTAAATTTGCAAGAGCACATAATGTTAAATTAAT
GACATTTGATAATCTTAGTGAATTAGAAAAAATTGAAAAGTTTTTCCCAGAAGCAGAATT
AGTATTAAGAATTGCACCAGATGATTCAAAATCTGTTATGAGATTTGGTTCTAAATTTGG
TGTTCATATTGATGATTGTAACGATTTGTTAGAGATGGCAAAGGAAATGAACCTCAAGGT
TGTTGGTGTTAGTTTCCATGTTGGTAGTGGATGTCAAAGTGGTGATTCATACGCTGATGC
TCTCATTATGGTAAAGAGTGTCTTTGATATGGCAAAGAAATTAAATATGGAATTAACATT
GGTCGATGTTGGTGGTGGTTTCACTGGTTCAGATGACGAGAAATTCAATGCATTCACAAA
GGTTATTCGTGAGAAAACCGCTGAACTCTTCTCACCAAATGTTAAAATTATCGCCGAGCC
AGGTCGTTACTTTGCAGCTCAATCCCATACACTCGCCGTCACTGTTATTTCAAAACGTTC
AATCAAACAAGAAGATAACAGACAACATCCACGTCGTACCTCAAATAATATGAGACAATA
CCATTACTATTXXXXXXXXXXTTGGCCGACGGTGTTTATGGTCATTCAATAACCCTAAAT
TCGATTATGCTAAAGTTGAACCTTTATTATTGAAACCTTCAACTAAACAACCAACTCCAT
GCACTCTCTTTGGTCCAACTTGTGATTCAATCGATGTGGTTCTTAAAGATACCCAAATTC
CAGAACTTAAAATTGGTGACTGGCTTTACTTCCAAGATATGGGTGCTTACACTATCGCTT
CATCTTCTTCTTTCAATGGTTTCTGTCCACCACCAGTTTATTATTACAATAGTATCCCAG
AAGAAGAATTAAAAAATTTATAAATCTTTTTTTTTTTTCCTCCCAAAATATAAAAAAAAA
AAAAAAAATAATAAACTTTAAAAAAAAAAAAAGAAATTAAAAAAAAAAANAAAAAAAAA
sequence update 1998. 7.29
Translated Amino Acid sequence 
RTEIESVLNLGVDPSRIIYANPCKQISALKFARAHNVKLMTFDNLSELEKIEKFFPEAEL
VLRIAPDDSKSVMRFGSKFGVHIDDCNDLLEMAKEMNLKVVGVSFHVGSGCQSGDSYADA
LIMVKSVFDMAKKLNMELTLVDVGGGFTGSDDEKFNAFTKVIREKTAELFSPNVKIIAEP
GRYFAAQSHTLAVTVISKRSIKQEDNRQHPRRTSNNMRQYHYY---

---GRRCLWSFNNPKFDYAKVEPLLLKPSTKQPTPCTLFGPTCDSIDVVLKDTQIPELKI
GDWLYFQDMGAYTIASSSSFNGFCPPPVYYYNSIPEEELKNL*iffffppki*kkkkk**
tlkkkkeikkkxkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
*n*n*isfkfrc*sksyylc*sm*tnlcs*ickst*c*indi**s**irkn*kvfprsri
siknctr*fkicyeiwf*iwcsy**l*rfvrdgkgnepqgcwc*fpcw*wmskw*fir*c
shygkecl*ygkeikyginigrcwwwfhwfr*reiqcihkgys*enr*tlltkc*nyrra
rsllcssipytrrhcyfktfnqtrr*qttstsylk*yetipll---

---ladgvyghsitlnsimlklnlyy*nlqlnnqlhalslvqlviqsmwflkipkfqnlk
lvtgftskiwvltlslhlllsmvsvhhqfiitivsqkkn*kiyksfffflpkykkkkknn
kl*kkkkklkkkxkk

Frame B:
RTEIESVLNLGVDPSRIIYANPCKQISALKFARAHNVKLMTFDNLSELEKIEKFFPEAEL
VLRIAPDDSKSVMRFGSKFGVHIDDCNDLLEMAKEMNLKVVGVSFHVGSGCQSGDSYADA
LIMVKSVFDMAKKLNMELTLVDVGGGFTGSDDEKFNAFTKVIREKTAELFSPNVKIIAEP
GRYFAAQSHTLAVTVISKRSIKQEDNRQHPRRTSNNMRQYHYY---

---wptvfmviq*p*irlc*s*tfiietfn*ttnsmhslwsnl*fnrcgs*rypnsrt*n
w*lallprygclhyrfifffqwflsttslllq*yprrrikkfinlfffssqnikkkkkii
nfkkkkrn*kkkxkk

Frame C:
elklnqf*i*vliqvvlfmlihvnkslllnlqehimln**hliilvn*kklksfsqkqn*
y*elhqmiqnll*dlvlnlvfilmivtic*rwqrk*tsrllvlvsmlvvdvkvvihtlml
slw*rvsliwqrn*iwn*hwsmlvvvslvqmtrnsmhsqrlfvrkplnsshqmlklspsq
vvtlqlnpihspsllfqnvqsnkkitdnihvvpqii*dntiti---

---GRRCLWSFNNPKFDYAKVEPLLLKPSTKQPTPCTLFGPTCDSIDVVLKDTQIPELKI
GDWLYFQDMGAYTIASSSSFNGFCPPPVYYYNSIPEEELKNL*iffffppki*kkkkk**
tlkkkkeikkkxkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB838 (SSB838Q) /CSM/SS/SSB8-B/SSB838Q.Seq.d/                       1931   0.0
SFK784 (SFK784Q) /CSM/SF/SFK7-D/SFK784Q.Seq.d/                        839   0.0
SSK493 (SSK493Q) /CSM/SS/SSK4-D/SSK493Q.Seq.d/                        591   e-168
AFK776 (AFK776Q) /CSM/AF/AFK7-D/AFK776Q.Seq.d/                        498   e-139
SSA864 (SSA864Q) /CSM/SS/SSA8-C/SSA864Q.Seq.d/                         46   0.001
SSB886 (SSB886Q) /CSM/SS/SSB8-D/SSB886Q.Seq.d/                         44   0.004
SSB528 (SSB528Q) /CSM/SS/SSB5-B/SSB528Q.Seq.d/                         44   0.004
SLC619 (SLC619Q) /CSM/SL/SLC6-A/SLC619Q.Seq.d/                         44   0.004
SSM669 (SSM669Q) /CSM/SS/SSM6-C/SSM669Q.Seq.d/                         42   0.017
SSI303 (SSI303Q) /CSM/SS/SSI3-A/SSI303Q.Seq.d/                         42   0.017
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390552) Dictyostelium discoideum cDNA clone:dds22h21, 5' ...   839   0.0    1
(BJ343362) Dictyostelium discoideum cDNA clone:dda22h19, 3' ...   498   0.0    3
(AU036935) Dictyostelium discoideum slug cDNA, clone SSB838.      605   e-168  1
(AU074363) Dictyostelium discoideum slug cDNA, clone SSK493.      476   e-130  1
(AU071586) Dictyostelium discoideum slug cDNA, clone SSB838.      476   e-130  1
(EH431785) NPE00000438 Neocallimastix patriciarum ZAP II cDN...    48   7e-12  4
(EH431537) NPE00000865 Neocallimastix patriciarum ZAP II cDN...    48   2e-09  3
(GO472811) EST_rcat_evr_1061309 rcatevr mixed_tissue Rana ca...    44   2e-04  4
(CK799387) AGENCOURT_18794575 NICHD_XGC_Te2N Xenopus laevis ...    54   3e-04  2
(BC047954) Xenopus laevis ornithine decarboxylase-2, mRNA (c...    54   5e-04  2
dna update 2009. 7. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UF3) RecName: Full=Probable ornithine decarboxylase;        ...   441   e-175
AY214169_1(AY214169|pid:none) Paralichthys olivaceus ornithine d...   211   2e-72
AB069857_1(AB069857|pid:none) Danio rerio mRNA for ornithine dec...   205   1e-71
BT044794_1(BT044794|pid:none) Salmo salar clone ssal-rgf-504-007...   210   6e-71
BC047954_1(BC047954|pid:none) Xenopus laevis ornithine decarboxy...   198   6e-70
(Q9I8S4) RecName: Full=Ornithine decarboxylase 2;          Short...   197   8e-70
(P27120) RecName: Full=Ornithine decarboxylase 1;          Short...   197   2e-69
BC044004_1(BC044004|pid:none) Xenopus laevis ornithine decarboxy...   197   2e-69
CR848307_1(CR848307|pid:none) Xenopus tropicalis finished cDNA, ...   196   4e-68
(P27117) RecName: Full=Ornithine decarboxylase;          Short=O...   195   1e-67
protein update 2009. 6. 9
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSB838 is nuc
5' end seq. ID SSB838F
5' end seq. 
>SSB838F.Seq
TAGAACTGAAATTGAATCAGTTTTAAATTTAGGTGTTGATCCAAGTCGTATTATTTATGC
TAATCCATGTAAACAAATCTCTGCTCTTAAATTTGCAAGAGCACATAATGTTAAATTAAT
GACATTTGATAATCTTAGTGAATTAGAAAAAATTGAAAAGTTTTTCCCAGAAGCAGAATT
AGTATTAAGAATTGCACCAGATGATTCAAAATCTGTTATGAGATTTGGTTCTAAATTTGG
TGTTCATATTGATGATTGTAACGATTTGTTAGAGATGGCAAAGGAAATGAACCTCAAGGT
TGTTGGTGTTAGTTTCCATGTTGGTAGTGGATGTCAAAGTGGTGATTCATACGCTGATGC
TCTCATTATGGTAAAGAGTGTCTTTGATATGGCAAAGAAATTAAATATGGAATTAACATT
GGTCGATGTTGGTGGTGGTTTCACTGGTTCAGATGACGAGAAATTCAATGCATTCACAAA
GGTTATTCGTGAGAAAACCGCTGAACTCTTCTCACCAAATGTTAAAATTATCGCCGAGCC
AGGTCGTTACTTTGCAGCTCAATCCCATACACTCGCCGTCACTGTTATTTCAAAACGTTC
AATCAAACAAGAAGATAACAGACAACATCCACGTCGTACCTCAAATAATATGAGACAATA
CCATTACTATT----------
Length of 5' end seq. 671
3' end seq. ID SSB838Z
3' end seq. 
>SSB838Z.Seq
----------
TTGGCCGACGGTGTTTATGGTCATTCAATAACCCTAAATTCGATTATGC
TAAAGTTGAACCTTTATTATTGAAACCTTCAACTAAACAACCAACTCCATGCACTCTCTT
TGGTCCAACTTGTGATTCAATCGATGTGGTTCTTAAAGATACCCAAATTCCAGAACTTAA
AATTGGTGACTGGCTTTACTTCCAAGATATGGGTGCTTACACTATCGCTTCATCTTCTTC
TTTCAATGGTTTCTGTCCACCACCAGTTTATTATTACAATAGTATCCCAGAAGAAGAATT
AAAAAATTTATAAATCTTTTTTTTTTTTCCTCCCAAAATATAAAAAAAAAAAAAAAAATA
ATAAACTTTAAAAAAAAAAAAAGAAATTAAAAAAAAAAANAAAAAAAAA
Length of 3' end seq. 399
Connected seq. ID SSB838P
Connected seq. 
>SSB838P.Seq
TAGAACTGAAATTGAATCAGTTTTAAATTTAGGTGTTGATCCAAGTCGTATTATTTATGC
TAATCCATGTAAACAAATCTCTGCTCTTAAATTTGCAAGAGCACATAATGTTAAATTAAT
GACATTTGATAATCTTAGTGAATTAGAAAAAATTGAAAAGTTTTTCCCAGAAGCAGAATT
AGTATTAAGAATTGCACCAGATGATTCAAAATCTGTTATGAGATTTGGTTCTAAATTTGG
TGTTCATATTGATGATTGTAACGATTTGTTAGAGATGGCAAAGGAAATGAACCTCAAGGT
TGTTGGTGTTAGTTTCCATGTTGGTAGTGGATGTCAAAGTGGTGATTCATACGCTGATGC
TCTCATTATGGTAAAGAGTGTCTTTGATATGGCAAAGAAATTAAATATGGAATTAACATT
GGTCGATGTTGGTGGTGGTTTCACTGGTTCAGATGACGAGAAATTCAATGCATTCACAAA
GGTTATTCGTGAGAAAACCGCTGAACTCTTCTCACCAAATGTTAAAATTATCGCCGAGCC
AGGTCGTTACTTTGCAGCTCAATCCCATACACTCGCCGTCACTGTTATTTCAAAACGTTC
AATCAAACAAGAAGATAACAGACAACATCCACGTCGTACCTCAAATAATATGAGACAATA
CCATTACTATT----------TTGGCCGACGGTGTTTATGGTCATTCAATAACCCTAAAT
TCGATTATGCTAAAGTTGAACCTTTATTATTGAAACCTTCAACTAAACAACCAACTCCAT
GCACTCTCTTTGGTCCAACTTGTGATTCAATCGATGTGGTTCTTAAAGATACCCAAATTC
CAGAACTTAAAATTGGTGACTGGCTTTACTTCCAAGATATGGGTGCTTACACTATCGCTT
CATCTTCTTCTTTCAATGGTTTCTGTCCACCACCAGTTTATTATTACAATAGTATCCCAG
AAGAAGAATTAAAAAATTTATAAATCTTTTTTTTTTTTCCTCCCAAAATATAAAAAAAAA
AAAAAAAATAATAAACTTTAAAAAAAAAAAAAGAAATTAAAAAAAAAAANAAAAAAAAA
Length of connected seq. 1069
Full length Seq ID -
Full length Seq. -
Length of full length seq. -