AFK784
Library AF
(Link to library)
Clone ID AFK784
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFK784P
(Link to Original site)
Representative DNA sequence
>AFK784 (AFK784Q) /CSM/AF/AFK7-D/AFK784Q.Seq.d/
TGCTTTTTCATGNGAAGGTCACCCANAACATGATCATGGGGATGGGGATCATGANCATGA
TCATGATGAATCATTTGTTAAAATCTTAAATTCTGATAATTTXXXXXXXXXXTCGAAGAT
GTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCGATATGAAG
AAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGCCATCTCT
GTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCATTC
GATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTTAAA
TCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTACCACTTTC
AAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGGTGC
GGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGACGTT
GAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATCGAA
ATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATCTCT
TATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGTTGCC
ATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAAAGATTCTT
CTGCTAAACAGANAATTATAAATAATTAATAAATATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
AFSXEGHPXHDHGDGDHXHDHDESFVKILNSDN---

---EDVKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEK
ETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEF
YAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDK
ENPISYEGQRNDHMNFVEFIQDNVAIEFKLPSSQTDDNVNLKKILLLNRXL*iinky


Translated Amino Acid sequence (All Frames)
Frame A:
cffmxrspxt*swgwgs*x*s**iic*nlkf**f---

---skm*rkslphkkvmpfsvgsi*rnshnkqliwvslvklfqpslliqlpiklvtismk
kkpshsipspngskmslvvkflhllnlnqnqnqmmlqlrlplvplskswf*thqrmfwln
stlhgaviarillqstin*vnt*ktlnlsqs*rlmptqmmyqvisklevtqpscssklmt
kkiqslmkvkemii*tllnsfkitlplnsnyhhlklmimxi*krffc*txnyk*lini

Frame B:
AFSXEGHPXHDHGDGDHXHDHDESFVKILNSDN---

---rrckenryltkr*crfllgryeeipttsnsygslw*scsshlc*fscq*sslqfr*k
rnlliryrlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*i
lrsmvrslqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**q
rksnll*rskk*syelc*ihsr*rch*iqitiisn***cxskkdssakqxiinn**i

Frame C:
lfhxkvtxnmimgmgimxmimmnhllks*ilii---

---EDVKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEK
ETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEF
YAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDK
ENPISYEGQRNDHMNFVEFIQDNVAIEFKLPSSQTDDNVNLKKILLLNRXL*iinky

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK784 (AFK784Q) /CSM/AF/AFK7-D/AFK784Q.Seq.d/ 1530 0.0
AFK804 (AFK804Q) /CSM/AF/AFK8-A/AFK804Q.Seq.d/ 1378 0.0
AFK831 (AFK831Q) /CSM/AF/AFK8-B/AFK831Q.Seq.d/ 1376 0.0
AFM669 (AFM669Q) /CSM/AF/AFM6-C/AFM669Q.Seq.d/ 1372 0.0
AFM464 (AFM464Q) /CSM/AF/AFM4-C/AFM464Q.Seq.d/ 1372 0.0
AFM204 (AFM204Q) /CSM/AF/AFM2-A/AFM204Q.Seq.d/ 1372 0.0
AFN128 (AFN128Q) /CSM/AF/AFN1-B/AFN128Q.Seq.d/ 1370 0.0
AFM861 (AFM861Q) /CSM/AF/AFM8-C/AFM861Q.Seq.d/ 1370 0.0
AFM249 (AFM249Q) /CSM/AF/AFM2-C/AFM249Q.Seq.d/ 1370 0.0
AFL563 (AFL563Q) /CSM/AF/AFL5-C/AFL563Q.Seq.d/ 1368 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end,single read. 599 e-167 1
CN206669|CN206669.1 Tor7097 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 78 2e-10 1
CN591465|CN591465.1 TTE00010235 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 4e-09 1
CN597971|CN597971.1 TTE00009997 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 4e-09 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 4e-09 1
CN590755|CN590755.1 TTE00006978 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 4e-09 1
CN206834|CN206834.1 Tor7258 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 70 6e-08 1
CK030146|CK030146.1 AGENCOURT_16621384 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7052631 5', mRNA sequence. 70 6e-08 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 70 6e-08 1
BC067155|BC067155.1 Danio rerio zgc:77086, mRNA (cDNA clone MGC:77086 IMAGE:6960343), complete cds. 70 6e-08 1
dna update 2004. 8. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 173 7e-42
EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 171 2e-41
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 169 1e-40
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 166 6e-40
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c... 162 1e-38
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 161 2e-38
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 153 7e-36
BC046707_1(BC046707|pid:none) Xenopus laevis glucose regulated p... 150 6e-35
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ... 150 6e-35
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 149 1e-34
protein update 2009. 4.25
PSORT

psg: 0.75 gvh: 0.29 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for AFK784 is cyt

5' end seq. ID AFK784F
5' end seq.
>AFK784F.Seq
TGCTTTTTCATGNGAAGGTCACCCANAACATGATCATGGGGATGGGGATCATGANCATGA
TCATGATGAATCATTTGTTAAAATCTTAAATTCTGATAATTT----------
Length of 5' end seq. 102
3' end seq. ID AFK784Z
3' end seq.
>AFK784Z.Seq
----------TCGAAGATGTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTC
TGTTGGGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAA
GTTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAA
AAAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAA
GTTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTT
GCCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAA
TTCTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGT
GAATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGAT
GTACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGAC
AAAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTC
ATTCAAGATAACGTTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTN
AATCTAAAAAAGATTCTTCTGCTAAACAGANAATTATAAATAATTAATAAATATA
Length of 3' end seq. 705
Connected seq. ID AFK784P
Connected seq.
>AFK784P.Seq
TGCTTTTTCATGNGAAGGTCACCCANAACATGATCATGGGGATGGGGATCATGANCATGA
TCATGATGAATCATTTGTTAAAATCTTAAATTCTGATAATTT----------TCGAAGAT
GTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCGATATGAAG
AAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGCCATCTCT
GTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCATTC
GATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTTAAA
TCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTACCACTTTC
AAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGGTGC
GGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGACGTT
GAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATCGAA
ATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATCTCT
TATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGTTGCC
ATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAAAGATTCTT
CTGCTAAACAGANAATTATAAATAATTAATAAATATA
Length of connected seq. 807
Full length Seq ID -
Full length Seq. -
Length of full length seq. -