SSB832
Library SS
(Link to library)
Clone ID SSB832
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSB832F
(Link to Original site)
Representative DNA sequence
>SSB832 (SSB832Q) /CSM/SS/SSB8-B/SSB832Q.Seq.d/
AAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGTTTTA
ATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAA
AAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGT
TTAAAAAAAAAATAAAAAATAATAAAAATTAAAAAAAAATTAAAAAAAAAACCTTTTAAA
ACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCT
TTGCTTTGCATTACTCTCCTCANGCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTC
AAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGT
CTTTAXXXXXXXXXX
sequence update 1998. 7.29
Translated Amino Acid sequence
kkkkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***aipwdlekikkf
kkkiknnkn*kkikkktf*nspstfwcfc*ANAKVSLSPFALHYSPXAQIISSSTNDAPQ
VSSGLIHHIPMQLSQMYKQS---


Translated Amino Acid sequence (All Frames)
Frame A:
kkkkkknkkkfnkf*ngivlikkkkkplslvvkkk*kikkkkikknnnklyhgt*rk*ks
lkkk*kiikikkklkkkpfktllllfgasvklmlrclsppllcitllxlr*srapltmll
kypqg*sitflcnslkcissl---


Frame B:
kkkkkkikknlisfkmv*f**kkkknhyh***kknkk*kkkk*kkiiisytmglrenkkv
*kknkk**klkkn*kknllklsfyflvllls*c*gvslplcfallssxsdnlelh*rcss
silrvnpshsyatlsnv*avf---


Frame C:
kkkkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***aipwdlekikkf
kkkiknnkn*kkikkktf*nspstfwcfc*ANAKVSLSPFALHYSPXAQIISSSTNDAPQ
VSSGLIHHIPMQLSQMYKQS---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSG321 (SSG321Q) /CSM/SS/SSG3-A/SSG321Q.Seq.d/ 379 e-104
SSC650 (SSC650Q) /CSM/SS/SSC6-C/SSC650Q.Seq.d/ 379 e-104
SSB832 (SSB832Q) /CSM/SS/SSB8-B/SSB832Q.Seq.d/ 379 e-104
VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/ 377 e-103
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/ 377 e-103
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/ 377 e-103
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/ 377 e-103
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/ 377 e-103
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/ 377 e-103
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/ 377 e-103

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(C94506) Dictyostelium discoideum slug cDNA, clone SSL114. 377 e-111 2
(C89831) Dictyostelium discoideum slug cDNA, clone SSG211. 377 e-111 2
(AU038639) Dictyostelium discoideum slug cDNA, clone SSL286. 377 e-111 2
(C93164) Dictyostelium discoideum slug cDNA, clone SSM728. 377 e-111 2
(C92937) Dictyostelium discoideum slug cDNA, clone SSF118. 377 e-111 2
(AU034859) Dictyostelium discoideum slug cDNA, clone SLE606. 377 e-111 2
(C94177) Dictyostelium discoideum slug cDNA, clone SSK503. 377 e-111 2
(C89636) Dictyostelium discoideum slug cDNA, clone SSA412. 377 e-111 2
(C91951) Dictyostelium discoideum slug cDNA, clone SSC549. 377 e-111 2
(C92601) Dictyostelium discoideum slug cDNA, clone SSF211. 377 e-111 2
dna update 2009. 7. 9
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 302,721,020
protein update 2009. 6. 9
PSORT

psg: 0.90 gvh: 0.41 alm: 0.48 top: 0.37 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for SSB832 is nuc

5' end seq. ID SSB832F
5' end seq.
>SSB832F.Seq
AAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGTTTTA
ATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAA
AAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGT
TTAAAAAAAAAATAAAAAATAATAAAAATTAAAAAAAAATTAAAAAAAAAACCTTTTAAA
ACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCT
TTGCTTTGCATTACTCTCCTCANGCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTC
AAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGT
CTTTA----------
Length of 5' end seq. 425
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -