SSB813 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSB813
Library	SS (Link to library)
Clone ID	SSB813 (Link to dictyBase)
Atlas ID	-
NBRP ID	G02083
dictyBase ID	DDB0218686
Link to Contig	-
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSB8-A/SSB813Q.Seq.d/
Representative seq. ID	SSB813E (Link to Original site)
Representative DNA sequence	>SSB813 (SSB813Q) /CSM/SS/SSB8-A/SSB813Q.Seq.d/ ACTATTTATTATTTATTATTATTTATATTAAATTATGTATTACAGTAATAAAATGTCAAA AGTAATTACAGGAAAGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGA TTGTTGGGTTGCAGTCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCC AGGTGGTAAAGAAGTTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAG TTATCATCCAATGTCAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATAT TTCATCATATGAACATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGA GAGAGTTAGAAAACATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTT CTCACGTTTAGCATTGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATAC CAGTAACAATTTTTATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATT ATTCTCAATGCATATGATGCATGATTCATGTCATGCTGCCATTTCACATTATCCAGGCGT ATGGAAATGGATGGGCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTTTCATGGTG TCATCAACATGTAATTGGTCATCATATTTACACCAATGTAAGAAATGCCGATCCAGATCT TGGTCAAGGTGAGGTCGATTTCCGTATTGTCACTCCATTCCAAACTCGTTCATGGTATCA TAAATATCAACACATTTACGCTCCACTCCTCTATGGTATTTACACACTCAAATATCGTAC TCAAGATTGGGAAGCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGC CACAAATTTCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTT CATCCTTCCACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGA ATTCGTCTTTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCT CAAATTCTTTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGC AATCCTTCAACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTT TAGTGGTTCTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTT CTACCCACAACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCA CATTAAACCAAACTTCACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGG TAATGATCCAGATTATGTTAAAAAACCATTAGCCTCAAAAGATGATTAAATGAAATAACT TAAAAACCAATTATTTACTTTTGACAAACAGTAATATTAATAAATACAA
sequence update	1999. 6.24
Translated Amino Acid sequence	lfiiyyylyIMYYSNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHP GGKEVLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKE RVRKHFKATDQDPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSL FSMHMMHDSCHAAISHYPGVWKWMGASFDFVTGASFLSWCHQHVIGHHIYTNVRNADPDL GQGEVDFRIVTPFQTRSWYHKYQHIYAPLLYGIYTLKYRTQDWEAFVKDGKNGAIRVSVA TNFDKAAYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDL KFFATPERPDEPSQINEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDF YPQLVPIVKEVCKEHNITYHIKPNFTEAIMSHINYLYKMGNDPDYVKKPLASKDDmkl knqlftfdkqy**iq
Translated Amino Acid sequence (All Frames)	Frame A: tiyylllfilnyvlq*nvksnyrkaillvrvsqthkllgcsrwslyykmgtits rwrsftfssrrcykfiklssnvrtninfkelnwiyfiitskicskirflqdikr esktfsnrsrstngsyfltfsiglsfsvcnllfstlyqqflfklflgnrlrtlqli ilnaydafmscchftlsrrmemdgriifrhwcfipfmvsstcnwssylhqckkcrsrs wsrgrfpychsipnsfmvsisthlrstplwylhtqisysrlgsfckgwkwcnsccr hkfrgrlrhwivfcflpfhpstplslyrfnllfphcirlwlvshnfpsscrrs qilcypktrtisnqrlgnpstnysrlwswftplylfwffkssscssfipincsrf lpttctnckrslrthylphtklhsyyvthlplqngsrlcktislkrlneit kpiiyfqtvilint Frame B: lfiiyyylyIMYYSNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHP GGKEVLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKE RVRKHFKATDQDPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSL FSMHMMHDSCHAAISHYPGVWKWMGASFDFVTGASFLSWCHQHVIGHHIYTNVRNADPDL GQGEVDFRIVTPFQTRSWYHKYQHIYAPLLYGIYTLKYRTQDWEAFVKDGKNGAIRVSVA TNFDKAAYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDL KFFATPERPDEPSQINEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDF YPQLVPIVKEVCKEHNITYHIKPNFTEAIMSHINYLYKMGNDPDYVKKPLASKDDmkl knqlftfdkqyiq Frame C: yllfiiiyiklcitvikcqklqesntlgqspnitlkmivglqsmvkfmilqdgyhyiq vvkkfyfqqvemlqiylkviiqcqinqhqfrimkldifhhmniqnlfknqistrhkr elenilkqpikihkwqlvfshvhwfifclltihiipvtifiivswqsfthfathy sqcicmihvmlpfhiiqaygngwahhlisslvlhsfhgvinmlviiftpmempiqil vkvrsisvlslhsklvhgiinintftlhssmvfthsnivlkigkllrmvkmvqfvlvsp qisirpltslvncllfssvssfhsviialqifvissllnsslvgisqlisklvmslkis nsllplkdqmnhlksmkigqsfnlkllkimvmvhsfvpflvvliiklfiiyshqllkis thnlyqlkkfvknitllttlnqtslkllchtlitftkwvmiqimlknhpqkmiknnl ktnyllltnsninky
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSB813 (SSB813Q) /CSM/SS/SSB8-A/SSB813Q.Seq.d/ 2868 0.0 SLA259 (SLA259Q) /CSM/SL/SLA2-C/SLA259Q.Seq.d/ 2383 0.0 SLA256 (SLA256Q) /CSM/SL/SLA2-C/SLA256Q.Seq.d/ 1471 0.0 VFM295 (VFM295Q) /CSM/VF/VFM2-D/VFM295Q.Seq.d/ 1350 0.0 VFN123 (VFN123Q) /CSM/VF/VFN1-A/VFN123Q.Seq.d/ 1346 0.0 VFE188 (VFE188Q) /CSM/VF/VFE1-D/VFE188Q.Seq.d/ 1340 0.0 VFI562 (VFI562Q) /CSM/VF/VFI5-C/VFI562Q.Seq.d/ 1326 0.0 VFD240 (VFD240Q) /CSM/VF/VFD2-B/VFD240Q.Seq.d/ 1324 0.0 VFB864 (VFB864Q) /CSM/VF/VFB8-C/VFB864Q.Seq.d/ 1324 0.0 CFC256 (CFC256Q) /CSM/CF/CFC2-C/CFC256Q.Seq.d/ 1322 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AB029311\|AB029311.1 Dictyostelium discoideum FadA gene for fatty acid desaturase, complete cds. 2137 0.0 3 BD092935\|BD092935.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids in plants. 1471 0.0 1 BD082645\|BD082645.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids. 1471 0.0 1 BD082630\|BD082630.1 Methods and compositions for synthesis of long chain poly-unsaturated fatty acids. 1471 0.0 1 AB022097\|AB022097.1 Dictyostelium discoideum mRNA for delta 5 fatty acid desaturase, complete cds. 149 e-135 12 AC129112\|AC129112.4 Rattus norvegicus clone CH230-265O9, * SEQUENCING IN PROGRESS , 5 unordered pieces. 48 0.31 1 AC137050\|AC137050.1 Rattus norvegicus clone CH230-unknown, SEQUENCING IN PROGRESS , 2 unordered pieces. 48 0.31 1 AC117308\|AC117308.7 Rattus norvegicus clone CH230-216M16, SEQUENCING IN PROGRESS , 2 unordered pieces. 48 0.31 1 AC117128\|AC117128.8 Rattus norvegicus clone CH230-230O8, SEQUENCING IN PROGRESS *, 5 unordered pieces. 48 0.31 1 AC024303\|AC024303.2 Homo sapiens clone RP11-23N5, WORKING DRAFT SEQUENCE, 25 unordered pieces. 36 0.63 9
dna update	2003. 7.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A; ... 941 0.0 (O96099) RecName: Full=Delta(5) fatty acid desaturase B; ... 649 0.0 (Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C... 576 e-163 AF419297_1(AF419297\|pid:none) Pythium irregulare delta-5 fatty a... 347 8e-94 AB188307_1(AB188307\|pid:none) Mortierella alpina gene for delta5... 332 2e-89 (O74212) RecName: Full=Delta(5) fatty acid desaturase; ... 328 2e-88 EF678404_1(EF678404\|pid:none) Picea sitchensis clone WS0291_A04 ... 280 1e-73 CQ831428_1(CQ831428\|pid:none) Sequence 9 from Patent WO2004057001. 279 2e-73 CP000592_278(CP000592\|pid:none) Ostreococcus lucimarinus CCE9901... 272 2e-71 CP001574_328(CP001574\|pid:none) Micromonas sp. RCC299 chromosome... 269 2e-70
protein update	2009. 7. 6
PSORT	psg: 0.70 gvh: 0.24 alm: 0.25 top: 0.63 tms: 0.07 mit: 0.32 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 28.0 %: cytoplasmic 28.0 %: nuclear 20.0 %: mitochondrial 8.0 %: plasma membrane 8.0 %: endoplasmic reticulum 4.0 %: vesicles of secretory system 4.0 %: peroxisomal >> prediction for SSB813 is cyt
5' end seq. ID	SSB813F
5' end seq.	>SSB813F.Seq TACTATTTATTATTTATTATTATTTATATTAAATTATGTATTACAGTAATAAAATGTCAA AAGTAATTACAGGAAAGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATG ATTGTTGGGTTGCAGTCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATC CAGGTGGTAAAGAAGTTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAA GTTATCATCCAATGTCAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATA TTTCATCATATGAACATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAG AGAGAGTTAGAAAACATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTT TCTCACGTTTAGCATTGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATA CCAGTAACAATTTTTATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCAT TATTCTCAATGCATATGATGCATGATTCATGTCATGCTGCCATTTCACATTATCCAGGCG T----------
Length of 5' end seq.	601
3' end seq. ID	SSB813Z
3' end seq.	>SSB813Z.Seq ---------- AACCCATCTCCAAATCAATGAAGATTGGGCAATCCTTCAACTTAAAACT ACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAATCAT CAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGTACCA ATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAACCAAACTTCACT GAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATGATCCAGATTATGTT AAAAAACCATTAGCCTCAAAAGATGATTAAATGAAATAACTTAAAAACCAATTATTTACT TTTGACAAACAGTAATATTAATAAATACAAAA
Length of 3' end seq.	382
Connected seq. ID	SSB813P
Connected seq.	>SSB813P.Seq TACTATTTATTATTTATTATTATTTATATTAAATTATGTATTACAGTAATAAAATGTCAA AAGTAATTACAGGAAAGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATG ATTGTTGGGTTGCAGTCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATC CAGGTGGTAAAGAAGTTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAA GTTATCATCCAATGTCAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATA TTTCATCATATGAACATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAG AGAGAGTTAGAAAACATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTT TCTCACGTTTAGCATTGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATA CCAGTAACAATTTTTATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCAT TATTCTCAATGCATATGATGCATGATTCATGTCATGCTGCCATTTCACATTATCCAGGCG T----------AACCCATCTCCAAATCAATGAAGATTGGGCAATCCTTCAACTTAAAACT ACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAATCAT CAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGTACCA ATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAACCAAACTTCACT GAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATGATCCAGATTATGTT AAAAAACCATTAGCCTCAAAAGATGATTAAATGAAATAACTTAAAAACCAATTATTTACT TTTGACAAACAGTAATATTAATAAATACAAAA
Length of connected seq.	982
Full length Seq ID	SSB813E
Full length Seq.	>SSB813E.Seq ACTATTTATTATTTATTATTATTTATATTAAATTATGTATTACAGTAATAAAATGTCAAA AGTAATTACAGGAAAGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGA TTGTTGGGTTGCAGTCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCC AGGTGGTAAAGAAGTTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAG TTATCATCCAATGTCAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATAT TTCATCATATGAACATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGA GAGAGTTAGAAAACATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTT CTCACGTTTAGCATTGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATAC CAGTAACAATTTTTATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATT ATTCTCAATGCATATGATGCATGATTCATGTCATGCTGCCATTTCACATTATCCAGGCGT ATGGAAATGGATGGGCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTTTCATGGTG TCATCAACATGTAATTGGTCATCATATTTACACCAATGTAAGAAATGCCGATCCAGATCT TGGTCAAGGTGAGGTCGATTTCCGTATTGTCACTCCATTCCAAACTCGTTCATGGTATCA TAAATATCAACACATTTACGCTCCACTCCTCTATGGTATTTACACACTCAAATATCGTAC TCAAGATTGGGAAGCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGC CACAAATTTCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTT CATCCTTCCACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGA ATTCGTCTTTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCT CAAATTCTTTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGC AATCCTTCAACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTT TAGTGGTTCTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTT CTACCCACAACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCA CATTAAACCAAACTTCACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGG TAATGATCCAGATTATGTTAAAAAACCATTAGCCTCAAAAGATGATTAAATGAAATAACT TAAAAACCAATTATTTACTTTTGACAAACAGTAATATTAATAAATACAA
Length of full length seq.	1489

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas