AFK779
Library AF
(Link to library)
Clone ID AFK779
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFK779Z
(Link to Original site)
Representative DNA sequence
>AFK779 (AFK779Q) /CSM/AF/AFK7-D/AFK779Q.Seq.d/
XXXXXXXXXXTAACACTCAAGTTCTCGAAGATGTAAAGAAAATCGCTACCTCACAAAAAG
GTAATGCCGTTTTCTGTTGGGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGG
GTCTCTCTGGTAAAGTTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTT
ACAATTTCGATGAAAAAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATG
TCATTGGTGGTAAAGTTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATG
CTCCAGTTAAGGTTGCCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGG
ATGTTTTGGTTGAATTCTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCT
ACGATAAATTAGGTGAATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATG
CCGACTCAAATGATGTACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCT
TCAAAGCTGATGACAAAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGA
ACTTTGTTGAATTCATTCAAGATAACGCTGCCATGAATTCAAATTACCATCATCTCAAAC
TGATGATAATGTNAATCTAAAAAAGATTCTTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---NTQVLEDVKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARY
NFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKD
VLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLF
KADDKENPISYEGQRNDHMNFVEFIQDNAAMNSNYHHLKLMIMXI*krff


Translated Amino Acid sequence (All Frames)
Frame A:
---NTQVLEDVKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARY
NFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKD
VLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLF
KADDKENPISYEGQRNDHMNFVEFIQDNAAMNSNYHHLKLMIMXI*krff


Frame B:
---tlkfskm*rkslphkkvmpfsvgsi*rnshnkqliwvslvklfqpslliqlpiklvt
ismkkkpshsipspngskmslvvkflhllnlnqnqnqmmlqlrlplvplskswf*thqrm
fwlnstlhgaviarillqstin*vnt*ktlnlsqs*rlmptqmmyqvisklevtqpscss
klmtkkiqslmkvkemii*tllnsfkitlp*iqitiisn***cxskkds


Frame C:
---hsssrrckenryltkr*crfllgryeeipttsnsygslw*scsshlc*fscq*sslq
fr*krnlliryrlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkvgfrltkgc
fg*ilrsmvrslqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalq
s**qrksnll*rskk*syelc*ihsr*rchefklpssqtddnvnlkkil


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO363 (AFO363Q) /CSM/AF/AFO3-C/AFO363Q.Seq.d/ 1346 0.0
AFM548 (AFM548Q) /CSM/AF/AFM5-B/AFM548Q.Seq.d/ 1346 0.0
AFK779 (AFK779Q) /CSM/AF/AFK7-D/AFK779Q.Seq.d/ 1346 0.0
AFK217 (AFK217Q) /CSM/AF/AFK2-A/AFK217Q.Seq.d/ 1346 0.0
AFJ889 (AFJ889Q) /CSM/AF/AFJ8-D/AFJ889Q.Seq.d/ 1346 0.0
AFM212 (AFM212Q) /CSM/AF/AFM2-A/AFM212Q.Seq.d/ 1340 0.0
AFK269 (AFK269Q) /CSM/AF/AFK2-C/AFK269Q.Seq.d/ 1340 0.0
AFJ487 (AFJ487Q) /CSM/AF/AFJ4-D/AFJ487Q.Seq.d/ 1340 0.0
AFM717 (AFM717Q) /CSM/AF/AFM7-A/AFM717Q.Seq.d/ 1338 0.0
AFJ720 (AFJ720Q) /CSM/AF/AFJ7-A/AFJ720Q.Seq.d/ 1334 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end,single read. 599 e-167 1
CN206669|CN206669.1 Tor7097 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 78 2e-10 1
CN591465|CN591465.1 TTE00010235 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN597971|CN597971.1 TTE00009997 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN590755|CN590755.1 TTE00006978 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN206834|CN206834.1 Tor7258 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 70 5e-08 1
CK030146|CK030146.1 AGENCOURT_16621384 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7052631 5', mRNA sequence. 70 5e-08 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 70 5e-08 1
BC067155|BC067155.1 Danio rerio zgc:77086, mRNA (cDNA clone MGC:77086 IMAGE:6960343), complete cds. 70 5e-08 1
dna update 2004. 8. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 173 4e-42
EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 170 3e-41
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 170 4e-41
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 165 1e-39
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c... 163 4e-39
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 160 3e-38
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 151 2e-35
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 150 3e-35
BC046707_1(BC046707|pid:none) Xenopus laevis glucose regulated p... 150 3e-35
(P13667) RecName: Full=Protein disulfide-isomerase A4; ... 150 3e-35
protein update 2009. 4.24
PSORT

psg: 0.65 gvh: 0.36 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: vesicles of secretory system

>> prediction for AFK779 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFK779Z
3' end seq.
>AFK779Z.Seq
----------TAACACTCAAGTTCTCGAAGATGTAAAGAAAATCGCTACCTCACAAAAAG
GTAATGCCGTTTTCTGTTGGGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGG
GTCTCTCTGGTAAAGTTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTT
ACAATTTCGATGAAAAAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATG
TCATTGGTGGTAAAGTTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATG
CTCCAGTTAAGGTTGCCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGG
ATGTTTTGGTTGAATTCTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCT
ACGATAAATTAGGTGAATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATG
CCGACTCAAATGATGTACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCT
TCAAAGCTGATGACAAAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGA
ACTTTGTTGAATTCATTCAAGATAACGCTGCCATGAATTCAAATTACCATCATCTCAAAC
TGATGATAATGTNAATCTAAAAAAGATTCTTC
Length of 3' end seq. 682
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -