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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB757
Library SS
(Link to library)
Clone ID SSB757
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID SSB757Z
(Link to Original site)
Representative DNA sequence 
>SSB757 (SSB757Q) /CSM/SS/SSB7-C/SSB757Q.Seq.d/
XXXXXXXXXXACCCAACAATTCCTTGATCGTATCGTTCTCTTTGCTAAATCCGTTAAACA
AATCATTCAAAAGGAAACCTCTGATCGGGAAATTGTCATCTCTATTCTCATGGATTTAGT
AAAGGGATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATAT
CTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCA
CGAAAATAATAAAATCTTTGATGAAATTCAAGTACTNTTAGGTTTATCATATTNAGCTGT
TGTTGCTAATTAGAGGAAAAAAAAAAAAAAAAA
sequence update 1997.11.25
Translated Amino Acid sequence 
---QQFLDRIVLFAKSVKQIIQKETSDREIVISILMDLVKGSANFGMTLSSTTPMSFDIS
QNAGKLAGAVNELVKDTAHENNKIFDEIQVLLGLSYXAVVAN*rkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---pnnslivsfsllnplnksfkrkpligklsslfswi**rdlqtlv*lslqlpqclsis
lkmlvnslvlsmn*lktlltkiikslmkfkyx*vyhixllllirgkkkkk


Frame B:
---ptip*syrslc*ir*tnhskgnl*sgnchlyshgfskgicklwydslfnypnvfryl
skcw*trwccq*is*rhcsrk**nl**nsstxrfiixsccc*leekkkkk


Frame C:
---QQFLDRIVLFAKSVKQIIQKETSDREIVISILMDLVKGSANFGMTLSSTTPMSFDIS
QNAGKLAGAVNELVKDTAHENNKIFDEIQVLLGLSYXAVVAN*rkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB757 (SSB757Q) /CSM/SS/SSB7-C/SSB757Q.Seq.d/                        595   e-169
SSH396 (SSH396Q) /CSM/SS/SSH3-D/SSH396Q.Seq.d/                        537   e-152
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                        537   e-152
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                        537   e-152
SLI758 (SLI758Q) /CSM/SL/SLI7-C/SLI758Q.Seq.d/                        537   e-152
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/                        537   e-152
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/                        529   e-150
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/                        478   e-134
SSG310 (SSG310Q) /CSM/SS/SSG3-A/SSG310Q.Seq.d/                        466   e-130
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/                        438   e-122
own update 2003.10.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.   535  e-148  1
AC107708|AC107708.4 Mus musculus clone RP24-149B6, WORKING DRAFT SEQUENCE, 9 ordered pieces.    44  0.40  2
AC111081|AC111081.4 Mus musculus clone RP23-134O18, WORKING DRAFT SEQUENCE, 15 unordered pieces.    40  0.56  4
AC124405|AC124405.3 Mus musculus chromosome UNK clone RP24-372I6, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  1.5  3
AC110302|AC110302.4 Mus musculus clone RP24-194G21, complete sequence.    34  3.5  4
AC091093|AC091093.1 Papio hamadryas clone RP41-323F4, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  4.0  5
AL304971|AL304971.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  007K03 of library H from Tetraodon nigroviridis.    42  4.1  1
Z19552|Z19552.1 R.norvegicus mRNA for DNA topoisomerase II.       42  4.1  1
AC111746|AC111746.4 Rattus norvegicus clone CH230-150I1, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  4.1  1
CB795875|CB795875.1 AMGNNUC:SRPB2-00272-C1-A srpb2 (10220) Rattus norvegicus cDNA clone srpb2-00272-c1 5', mRNA sequence.    42  4.1  1
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   175   4e-43
(Q9Y8H3) RecName: Full=1,4-alpha-glucan-branching enzyme;       ...    36   0.47
(Q601A7) RecName: Full=Protein translocase subunit secA;               35   0.62
AE017243_83(AE017243|pid:none) Mycoplasma hyopneumoniae J, compl...    35   0.62
AE017332_293(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co...    35   0.62
(Q4AAP5) RecName: Full=Protein translocase subunit secA;               35   0.62
(Q96VA4) RecName: Full=1,4-alpha-glucan-branching enzyme;       ...    34   1.4
CP001071_1691(CP001071|pid:none) Akkermansia muciniphila ATCC BA...    33   4.0
CP001032_32(CP001032|pid:none) Opitutus terrae PB90-1, complete ...    32   5.3
protein update 2009. 1.27
PSORT 

 psg: 0.84  gvh: 0.46  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSB757 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB757Z
3' end seq. 
>SSB757Z.Seq
----------ACCCAACAATTCCTTGATCGTATCGTTCTCTTTGCTAAATCCGTTAAACA
AATCATTCAAAAGGAAACCTCTGATCGGGAAATTGTCATCTCTATTCTCATGGATTTAGT
AAAGGGATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATAT
CTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCA
CGAAAATAATAAAATCTTTGATGAAATTCAAGTACTNTTAGGTTTATCATATTNAGCTGT
TGTTGCTAATTAGAGGAAAAAAAAAAAAAAAAA
Length of 3' end seq. 323
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -