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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFK775
Library AF
(Link to library)
Clone ID AFK775
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID AFK775P
(Link to Original site)
Representative DNA sequence 
>AFK775 (AFK775Q) /CSM/AF/AFK7-D/AFK775Q.Seq.d/
ACTGGAAAAAAACATTTTTTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAA
TATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGA
AAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATT
GCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCA
GCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATT
GGTCAAGCCATGAGAGAGAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGT
AAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCA
ACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATT
TTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCA
TGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGGTAACGTCCAXXXXXX
XXXXAAGGTGTTTTAGTAGGTCCNCNCCNCNCCCAAAGCGCTGTTAAANAATTCNCTGAA
GGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGAN
ATCAGTGGTGGAAACTTTGTTGAACCNACCGTCGTTGCCNTTGAACATGATGCTCCNATN
GTAAAGACTGAACTCTTTGTTCCNATTCTNTACATAATGAAATTCAAAAATCTTGACGAT
GCTTTTGCCTGGAANAATGAAGTCCCNCAAGGTCTCTCATCTTCCCTNTTCNCAAACAAT
CAAAANAATATCTTCAAANGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTA
AATGNAGCTACNAACGGNGCTGAAATTGGTGGNGCCCTTGGAGGTGAAAAANAGACCGGA
GGTGGCANANAATCTGGCNCAGACAGCNGGAAACAGNATTGCCGTCGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
wkktffnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**syc
nc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssheren*tiikinfirng*
nlh*s*r*strih*rmrlcnwfk*inqwssdai*TSKSHFNGNLESIRFSWYHYCFQFPM
CRTWLECCNLNDLRVTS---

---GVLVGPXXXQSAVKXFXEGXXXIKXQGGKVVIGGNKLXISGGNFVEPTVVAXEHDAP
XVKTELFVPILYIMKFKNLDDAFAWXNEVPQGLSSSLFXNNQXNIFKXLGPTGSDCGIVN
VNXATNGAEIGGALGGEKXTGGGXXSGXDSXKQXCRR
Translated Amino Acid sequence (All Frames) 
Frame A:
tgkkhflikqin*kmttfneypflaelgikaenndgvfngkwggageiikclnptnnkvi
atvrgaapeeyetciqamlaakvkwaltpaprrgeivrligqamrekieplsklislemg
kiyieakgevqefidvcdyatglsrsingqvmpserpnhilmetwnplglvgiitafnfp
cavlgwnaaismicg*rp---

---kvf**vxxxpkallxnslkvxxk*kxkvvrsslvvinsxsvvetllnxpslplnmml
xx*rlnslfxfxt**nskiltmllpgxmksxkvshlpxsqtikxissxgldxpdltvx*l
t*mxlxtxlklvxplevkxrpevaxnlaqtagnxiavv

Frame B:
leknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikll
qllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*erklnhyqn*fh*kwv
kftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsish
vpylvgmlqsq*fagnv---

---rcfsrsxpxpkrc*xix*rxxxnkkxrw*grhww**trxqwwklc*txrrcx*t*cs
xxkd*tlcsxsxhneiqks*rcfclex*spxrslifpxxkqskxylqxawtxri*lwxs*
rkxsyxrx*nwwxpwr*kxdrrwxxiwxrqxetxlps

Frame C:
wkktffnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**syc
nc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssheren*tiikinfirng*
nlh*s*r*strih*rmrlcnwfk*inqwssdai*TSKSHFNGNLESIRFSWYHYCFQFPM
CRTWLECCNLNDLRVTS---

---GVLVGPXXXQSAVKXFXEGXXXIKXQGGKVVIGGNKLXISGGNFVEPTVVAXEHDAP
XVKTELFVPILYIMKFKNLDDAFAWXNEVPQGLSSSLFXNNQXNIFKXLGPTGSDCGIVN
VNXATNGAEIGGALGGEKXTGGGXXSGXDSXKQXCRR
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFK775 (AFK775Q) /CSM/AF/AFK7-D/AFK775Q.Seq.d/                       1195   0.0
SFK239 (SFK239Q) /CSM/SF/SFK2-B/SFK239Q.Seq.d/                       1138   0.0
SFJ544 (SFJ544Q) /CSM/SF/SFJ5-B/SFJ544Q.Seq.d/                       1138   0.0
SFJ536 (SFJ536Q) /CSM/SF/SFJ5-B/SFJ536Q.Seq.d/                       1138   0.0
CFG333 (CFG333Q) /CSM/CF/CFG3-B/CFG333Q.Seq.d/                       1138   0.0
CFG448 (CFG448Q) /CSM/CF/CFG4-B/CFG448Q.Seq.d/                       1136   0.0
VFN466 (VFN466Q) /CSM/VF/VFN4-C/VFN466Q.Seq.d/                       1122   0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/                       1122   0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/                       1122   0.0
VFC606 (VFC606Q) /CSM/VF/VFC6-A/VFC606Q.Seq.d/                       1122   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   763   0.0    8
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   8e-12  2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   2e-08  2
CN903667|CN903667.1 021018ABCA005552HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus x domestica cDNA clone ABCA005552, mRNA sequence.    72   2e-08  1
CN875989|CN875989.1 020813AARA008546HT (AARA) Royal Gala partially senescing leaf Malus x domestica cDNA clone AARA008546, mRNA sequence.    72   2e-08  1
CN883223|CN883223.1 010813AASB004877HT (AASB) Royal Gala 10 DAFB fruit Malus x domestica cDNA clone AASB004877, mRNA sequence.    72   2e-08  1
CN902319|CN902319.1 021014ABCA004075HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus x domestica cDNA clone ABCA004075, mRNA sequence.    64   5e-06  1
CN895049|CN895049.1 010626AAYA004321HT (AAYA) Royal Gala 126 DAFB fruit cortex Malus x domestica cDNA clone AAYA004321, mRNA sequence.    64   5e-06  1
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds.    46   5e-06  2
BG444603|BG444603.1 GA__Ea0024O05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0024O05f, mRNA sequence.    42   3e-04  2
dna update 2004. 8. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   371   e-101
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   231   4e-59
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   228   2e-58
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   225   2e-57
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   222   1e-56
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   221   3e-56
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   219   1e-55
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   218   2e-55
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   218   4e-55
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   218   4e-55
protein update 2009. 4.24
PSORT 

 psg: 0.69  gvh: 0.51  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: cytoskeletal

>> prediction for AFK775 is mit
5' end seq. ID AFK775F
5' end seq. 
>AFK775F.Seq
ACTGGAAAAAAACATTTTTTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAA
TATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGA
AAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATT
GCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCA
GCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATT
GGTCAAGCCATGAGAGAGAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGT
AAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCA
ACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATT
TTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCA
TGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGGTAACGTCCA------
----
Length of 5' end seq. 594
3' end seq. ID AFK775Z
3' end seq. 
>AFK775Z.Seq
----------AAGGTGTTTTAGTAGGTCCNCNCCNCNCCCAAAGCGCTGTTAAANAATTC
NCTGAAGGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAA
CTCGANATCAGTGGTGGAAACTTTGTTGAACCNACCGTCGTTGCCNTTGAACATGATGCT
CCNATNGTAAAGACTGAACTCTTTGTTCCNATTCTNTACATAATGAAATTCAAAAATCTT
GACGATGCTTTTGCCTGGAANAATGAAGTCCCNCAAGGTCTCTCATCTTCCCTNTTCNCA
AACAATCAAAANAATATCTTCAAANGGCTTGGACCNACCGGATCTGACTGTGGNATAGTT
AACGTAAATGNAGCTACNAACGGNGCTGAAATTGGTGGNGCCCTTGGAGGTGAAAAANAG
ACCGGAGGTGGCANANAATCTGGCNCAGACAGCNGGAAACAGNATTGCCGTCGTA
Length of 3' end seq. 465
Connected seq. ID AFK775P
Connected seq. 
>AFK775P.Seq
ACTGGAAAAAAACATTTTTTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAA
TATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGA
AAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATT
GCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCA
GCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATT
GGTCAAGCCATGAGAGAGAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGT
AAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCA
ACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATT
TTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCA
TGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGGTAACGTCCA------
----AAGGTGTTTTAGTAGGTCCNCNCCNCNCCCAAAGCGCTGTTAAANAATTCNCTGAA
GGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGAN
ATCAGTGGTGGAAACTTTGTTGAACCNACCGTCGTTGCCNTTGAACATGATGCTCCNATN
GTAAAGACTGAACTCTTTGTTCCNATTCTNTACATAATGAAATTCAAAAATCTTGACGAT
GCTTTTGCCTGGAANAATGAAGTCCCNCAAGGTCTCTCATCTTCCCTNTTCNCAAACAAT
CAAAANAATATCTTCAAANGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTA
AATGNAGCTACNAACGGNGCTGAAATTGGTGGNGCCCTTGGAGGTGAAAAANAGACCGGA
GGTGGCANANAATCTGGCNCAGACAGCNGGAAACAGNATTGCCGTCGTA
Length of connected seq. 1059
Full length Seq ID -
Full length Seq. -
Length of full length seq. -