>SSB721 (SSB721Q) /CSM/SS/SSB7-A/SSB721Q.Seq.d/
AAATGATATTAATTCCATAGTTTGTAAAGCTAATTCCCAATGTCCAACAAGTCATATTTG
TACATCATCCAATAAATGTATAATAAAATATTCTTCAAAAGTTGGTGAAAAATGTACCGA
TTCTCCATTACAATGCAGGGTTTTCAATGGTGAAATATGTAATCAAGAAACTCAAAAATG
TATTAAAAATGATCAATATTTTAAACAATGTGAAGATGAATCAACATGTAATGGTGGTNT
CTGTGTTTGTTTAGATGATGTTAATAGCAAATCAGTATGTGTAGGTCCAAATGGTGAATT
AAATAATGAAAAATGTGTAAACCTTGAACAAAAACTTGAACAATGTCTTATAAATGAAAA
ATGTAATACATTATCACCAATAACTTGTAAATGTTTTAAACAATTTGAATGTTTCCAATA
TGAATGTAATTCAGTTGAAAGATTTTATAATTATAAATCAAATTATTATCAATCTTTAAA
TTGTTCTAGATTTTTAACAAAACCTTAAAAAAAATAAATAAATAATATTTTATAAATATA
TAAAAAATA

NDINSIVCKANSQCPTSHICTSSNKCIIKYSSKVGEKCTDSPLQCRVFNGEICNQETQKC
IKNDQYFKQCEDESTCNGGXCVCLDDVNSKSVCVGPNGELNNEKCVNLEQKLEQCLINEK
CNTLSPITCKCFKQFECFQYECNSVERFYNYKSNYYQSLNCSRFLTKP*kk*innil*iy
kk

Frame A:
k*y*fhsl*s*fpmsnksylyiiq*mynkiffksw*kmyrfsitmqgfqw*nm*srnskm
y*k*sif*tm*r*inm*wwxlclfr*c**qismcrskw*ik**kmckp*tkt*tmsyk*k
m*yiitnnl*mf*ti*mfpi*m*fs*kil*l*ikllsifklf*ifnktlkkink*yfini
*ki


Frame B:
NDINSIVCKANSQCPTSHICTSSNKCIIKYSSKVGEKCTDSPLQCRVFNGEICNQETQKC
IKNDQYFKQCEDESTCNGGXCVCLDDVNSKSVCVGPNGELNNEKCVNLEQKLEQCLINEK
CNTLSPITCKCFKQFECFQYECNSVERFYNYKSNYYQSLNCSRFLTKP*kk*innil*iy
kk


Frame C:
milip*fvklipnvqqvifvhhpinv**nilqklvknvpilhynagfsmvkyvikklknv
lkminilnnvkmnqhvmvvsvfv*mmlianqyv*vqmvn*imknv*tlnknlnnvl*mkn
vihyhq*lvnvlnnlnvsnmnviqlkdfiiinqiiinl*ivldf*qnlkknk*iifykyi
kn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB721 (SSB721Q) /CSM/SS/SSB7-A/SSB721Q.Seq.d/                        997   0.0
VSG848 (VSG848Q) /CSM/VS/VSG8-B/VSG848Q.Seq.d/                         38   0.14
SSA235 (SSA235Q) /CSM/SS/SSA2-B/SSA235Q.Seq.d/                         38   0.14
CHC659 (CHC659Q) /CSM/CH/CHC6-C/CHC659Q.Seq.d/                         38   0.14
AFE481 (AFE481Q) /CSM/AF/AFE4-D/AFE481Q.Seq.d/                         38   0.14
VSE827 (VSE827Q) /CSM/VS/VSE8-B/VSE827Q.Seq.d/                         36   0.54
VFJ896 (VFJ896Q) /CSM/VF/VFJ8-D/VFJ896Q.Seq.d/                         36   0.54
VFI569 (VFI569Q) /CSM/VF/VFI5-C/VFI569Q.Seq.d/                         36   0.54
VFI269 (VFI269Q) /CSM/VF/VFI2-C/VFI269Q.Seq.d/                         36   0.54
SSH477 (SSH477Q) /CSM/SS/SSH4-D/SSH477Q.Seq.d/                         36   0.54

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   997  0.0  1
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    40  0.001  10
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    36  0.026  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  0.041  10
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    38  0.093  12
BX191803|BX191803.1 Danio rerio genomic clone DKEY-206M22, genomic survey sequence.    42  0.097  2
BX156066|BX156066.1 Danio rerio genomic clone DKEY-150L23, genomic survey sequence.    42  0.098  2
AC112908|AC112908.3 Homo sapiens 3 BAC RP11-657F23 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    48  0.11  1
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    34  0.12  7
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    34  0.13  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_32(AC115680|pid:none) Dictyostelium discoideum chromoso...   366   e-100
AC115680_25(AC115680|pid:none) Dictyostelium discoideum chromoso...    99   7e-20
AF051401_1(AF051401|pid:none) Caenorhabditis elegans fibulin-1 i...    50   5e-05
AF070477_1(AF070477|pid:none) Caenorhabditis elegans fibulin-1D ...    50   5e-05
AC116977_110(AC116977|pid:none) Dictyostelium discoideum chromos...    46   5e-04
BC145487_1(BC145487|pid:none) Mus musculus slit homolog 2 (Droso...    45   0.001
AL844509_613(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    45   0.002
AY123118_1(AY123118|pid:none) Griffithsia japonica growth factor...    44   0.004
T22793(T22793;T24489)hypothetical protein F56H11.1 - Caenorhabdi...    42   0.014
EU072820_1(EU072820|pid:none) Drosophila americana isolate IR04....    42   0.014

 psg: 0.83  gvh: 0.32  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSB721 is nuc

>SSB721E.Seq
AAATGATATTAATTCCATAGTTTGTAAAGCTAATTCCCAATGTCCAACAAGTCATATTTG
TACATCATCCAATAAATGTATAATAAAATATTCTTCAAAAGTTGGTGAAAAATGTACCGA
TTCTCCATTACAATGCAGGGTTTTCAATGGTGAAATATGTAATCAAGAAACTCAAAAATG
TATTAAAAATGATCAATATTTTAAACAATGTGAAGATGAATCAACATGTAATGGTGGTNT
CTGTGTTTGTTTAGATGATGTTAATAGCAAATCAGTATGTGTAGGTCCAAATGGTGAATT
AAATAATGAAAAATGTGTAAACCTTGAACAAAAACTTGAACAATGTCTTATAAATGAAAA
ATGTAATACATTATCACCAATAACTTGTAAATGTTTTAAACAATTTGAATGTTTCCAATA
TGAATGTAATTCAGTTGAAAGATTTTATAATTATAAATCAAATTATTATCAATCTTTAAA
TTGTTCTAGATTTTTAACAAAACCTTAAAAAAAATAAATAAATAATATTTTATAAATATA
TAAAAAATA