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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB693
Library SS
(Link to library)
Clone ID SSB693
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSB693Z
(Link to Original site)
Representative DNA sequence 
>SSB693 (SSB693Q) /CSM/SS/SSB6-D/SSB693Q.Seq.d/
XXXXXXXXXXGTTCCCATCATCAGAAGTTGGAGTTTTAAATATTGTATCACAATTAAAAG
GTATCAAAGGATCAGTTTTTGTTGCCAAAGAATCTGACACCCAATTTGAAATTGAAGGTG
CCCAAAATATTTTATTATCAGAAGCCTCAAAAATTCAACCAACCTTATCAAACAAAGTTG
TTGATATCGTAGTTGTTTNACTCGCTCAAAATCAAGACTCAACCATCAAACAATTCCAAT
CTGTTGTTGAAAAATCATCATTCGTTTCTTTCTTTACTGCTGCTTCTGCTCATGAATTTG
ATGTTCAAGCTACTTTCAACAAACAAGTTGAACAATCATTTTTACAAGATGGTTCATCAT
CATTAAATTCAGCCAGCCAACAAGGTAGTGGATCAAGTAGTTCAGGATCAAATGAACCAA
CTAAACAACATTTCACTTATGTTACTGGTCCAGTCCTTTCTGCTTATTTGATTATCTCAA
TCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTCTGATCTCCAAGTTCCAGATA
GATACGAAGCACCAAAGAGCAAAGTACTTTAAAAAAAAAAAAATAATAAAAAATTAATAC
CAAATAATTTATAAAACAAATAAAATATGACATATAATAAAAAATAAAAAATAAACAAAA
sequence update 1997.12. 4
Translated Amino Acid sequence 
---FPSSEVGVLNIVSQLKGIKGSVFVAKESDTQFEIEGAQNILLSEASKIQPTLSNKVV
DIVVVXLAQNQDSTIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQDGSSS
LNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDR
YEAPKSKVL*kkknnkklipnnl*nk*nmtynkk*kink
Translated Amino Acid sequence (All Frames) 
Frame A:
---FPSSEVGVLNIVSQLKGIKGSVFVAKESDTQFEIEGAQNILLSEASKIQPTLSNKVV
DIVVVXLAQNQDSTIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQDGSSS
LNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDR
YEAPKSKVL*kkknnkklipnnl*nk*nmtynkk*kink


Frame B:
---shhqklef*ilyhn*kvskdqfllpknltpnlklkvpkifyyqkpqkfnqpyqtkll
is*lfxslkiktqpsnnsnlllknhhsflsllllllmnlmfkllstnklnnhfykmvhhh
*iqpankvvdqvvqdqmnqlnnislmllvqsflli*lsqsy*pfyslvfvvfliskfqid
tkhqrakyfkkkkiikn*yqiiyktnki*hiiknkk*tk


Frame C:
---piirswsfkycitikryqrisfccqri*hpi*n*rcpkyfiirslknstnlikqsc*
yrscxtrsksrlnhqtipicc*kiiirfflyccfcs*i*cssyfqqts*tiiftrwfiii
kfsqptr*wik*frik*tn*ttfhlcywsspfclfdylnlishfihwyllyf*spssr*i
rstkeqstlkkkk**kintk*fikqikydi**kiknkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB693 (SSB693Q) /CSM/SS/SSB6-D/SSB693Q.Seq.d/                       1104   0.0
SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                       1096   0.0
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                       1096   0.0
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                       1096   0.0
SSE549 (SSE549Q) /CSM/SS/SSE5-C/SSE549Q.Seq.d/                       1096   0.0
SSC826 (SSC826Q) /CSM/SS/SSC8-B/SSC826Q.Seq.d/                       1096   0.0
FC-AZ21 (FC-AZ21Q) /CSM/FC/FC-AZ/FC-AZ21Q.Seq.d/                     1096   0.0
SSF812 (SSF812Q) /CSM/SS/SSF8-A/SSF812Q.Seq.d/                       1088   0.0
SSA685 (SSA685Q) /CSM/SS/SSA6-D/SSA685Q.Seq.d/                       1088   0.0
SSC673 (SSC673Q) /CSM/SS/SSC6-D/SSC673Q.Seq.d/                       1082   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   583  0.0  2
AC123184|AC123184.4 Rattus norvegicus clone CH230-246F14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.54  1
AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.54  1
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence.    46  0.54  1
BZ280299|BZ280299.1 CH230-393O23.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-393O23, DNA sequence.    46  0.54  1
AC100822|AC100822.2 Homo sapiens chromosome 8, clone RP11-654O1, complete sequence.    44  1.5  2
AP004824|AP004824.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 3/10.    38  1.5  5
AC118764|AC118764.3 Rattus norvegicus clone CH230-335N22, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    38  1.7  2
AL117193|AL117193.2 Caenorhabditis elegans YAC Y105C5A.           42  1.9  5
AC098920|AC098920.6 Rattus norvegicus clone CH230-201C23, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44  2.1  1
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   226   5e-58
protein update 2009. 1.27
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: vesicles of secretory system
	 16.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SSB693 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB693Z
3' end seq. 
>SSB693Z.Seq
----------GTTCCCATCATCAGAAGTTGGAGTTTTAAATATTGTATCACAATTAAAAG
GTATCAAAGGATCAGTTTTTGTTGCCAAAGAATCTGACACCCAATTTGAAATTGAAGGTG
CCCAAAATATTTTATTATCAGAAGCCTCAAAAATTCAACCAACCTTATCAAACAAAGTTG
TTGATATCGTAGTTGTTTNACTCGCTCAAAATCAAGACTCAACCATCAAACAATTCCAAT
CTGTTGTTGAAAAATCATCATTCGTTTCTTTCTTTACTGCTGCTTCTGCTCATGAATTTG
ATGTTCAAGCTACTTTCAACAAACAAGTTGAACAATCATTTTTACAAGATGGTTCATCAT
CATTAAATTCAGCCAGCCAACAAGGTAGTGGATCAAGTAGTTCAGGATCAAATGAACCAA
CTAAACAACATTTCACTTATGTTACTGGTCCAGTCCTTTCTGCTTATTTGATTATCTCAA
TCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTCTGATCTCCAAGTTCCAGATA
GATACGAAGCACCAAAGAGCAAAGTACTTTAAAAAAAAAAAAATAATAAAAAATTAATAC
CAAATAATTTATAAAACAAATAAAATATGACATATAATAAAAAATAAAAAATAAACAAAA
Length of 3' end seq. 650
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -