>SSB649 (SSB649Q) /CSM/SS/SSB6-C/SSB649Q.Seq.d/
XXXXXXXXXXATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGG
TTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTTTGGAATAAATGCATCAAAAGA
TCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGC
CAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGT
ACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATT
TGCTTGGAAATTTTATGAAGGAAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACA
AAAACATTAAAAAAAAAAAAAAAAAAAAATTTAGTTTTTGTATAAAAAAAAAAACAAAAA
AAAAAAAAAAAAAAAAAAAATCAAAAATAAAGAAAAATACTATGACTTAAAAAAACTTAA

---TDNWDKEKLAKKAAEGLKNAKNTASSYAFGINASKDQLNSNFKNIKENISSNLNNAK
HTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAWKFYEGKKYKENEQKLIKQK
H*kkkkkki*flykkknkkkkkkkkiknkekyydlkkl

Frame A:
---*liigikknllkkqqkv*rmprilhphmple*mhqkin*iqiskilkrtfqai*imp
nillkkmsimlkepvihqryqlldqinslvs*lwvylvyllgnfmkerntkrmnkn*lnk
nikkkkkkkfsfcikkktkkkkkkkkskikkntmt*knl


Frame B:
---d**lg*rktc*kssrrfkecqeyciliclwnkcikrsikfkfqky*rehfkqfe*cq
tyy*rkcp*csknrlstkgtsswik*ihwfpsfgciwficleil*rkeiqre*tkin*tk
tlkkkkkknlvfv*kkkqkkkkkkknqk*rkil*lkkt*


Frame C:
---TDNWDKEKLAKKAAEGLKNAKNTASSYAFGINASKDQLNSNFKNIKENISSNLNNAK
HTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAWKFYEGKKYKENEQKLIKQK
H*kkkkkki*flykkknkkkkkkkkiknkekyydlkkl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB649 (SSB649Q) /CSM/SS/SSB6-C/SSB649Q.Seq.d/                        710   0.0
SSB587 (SSB587Q) /CSM/SS/SSB5-D/SSB587Q.Seq.d/                        698   0.0
SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/                        694   0.0
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/                        694   0.0
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/                        694   0.0
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/                        694   0.0
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/                        694   0.0
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/                        694   0.0
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/                        694   0.0
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/                        694   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AV234950|AV234950.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732401F15, 3' end partial sequence.    52  0.006  1
AF071814|AF071814.1 Streptococcus pneumoniae strain WU2 PspA (pspA) gene, partial cds.    52  0.006  1
AC103249|AC103249.5 Rattus norvegicus clone CH230-151B16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  0.034  7
AZ522713|AZ522713.1 210PbA05 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    42  0.060  2
AX417037|AX417037.1 Sequence 4028 from Patent WO0228891.          42  0.079  5
BM164672|BM164672.1 EST567195 PyBS Plasmodium yoelii yoelii cDNA clone PYCLX63 5' end, mRNA sequence.    42  0.079  2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38  0.092  10
AL121717|AL121717.13 Human DNA sequence from clone RP1-214H13 on chromosome 6q15-16.2.    32  0.13  6
AC121621|AC121621.4 Rattus norvegicus clone CH230-462E7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36  0.16  5
AC005825|AC005825.4 Arabidopsis thaliana chromosome 2 clone T24I21 map mi398, complete sequence.    36  0.18  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A...    35   0.64
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f...    35   0.64
AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ...    35   1.1
AL844507_240(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    34   1.9
EF145887_1(EF145887|pid:none) Populus trichocarpa clone WS0114_A...    33   3.2
CP000768_40(CP000768|pid:none) Campylobacter jejuni subsp. doyle...    33   3.2
AL844505_83(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    33   4.2
(Q14JW6) RecName: Full=Lipid A export ATP-binding/permease prote...    32   5.5
CP000049_532(CP000049|pid:none) Borrelia turicatae 91E135, compl...    32   5.5
CP000439_1555(CP000439|pid:none) Francisella tularensis subsp. n...    32   5.5

 psg: 0.51  gvh: 0.36  alm: 0.31  top: 0.47  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSB649 is nuc

>SSB649Z.Seq
----------ATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGG
TTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTTTGGAATAAATGCATCAAAAGA
TCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGC
CAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGT
ACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATT
TGCTTGGAAATTTTATGAAGGAAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACA
AAAACATTAAAAAAAAAAAAAAAAAAAAATTTAGTTTTTGTATAAAAAAAAAAACAAAAA
AAAAAAAAAAAAAAAAAAAATCAAAAATAAAGAAAAATACTATGACTTAAAAAAACTTAA