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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB632
Library SS
(Link to library)
Clone ID SSB632
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12252-1
Original site URL
Representative seq. ID SSB632P
(Link to Original site)
Representative DNA sequence 
>SSB632 (SSB632Q) /CSM/SS/SSB6-B/SSB632Q.Seq.d/
GTAACTATTTGTGGTGATATTCATGGTCAATTCTATGATTTAAAAGAACTTTTTAAAGTT
GGAGGAGATTGTCCACAAACCAATTATCTTTTTATGGGAGATTTTGTAGATAGAGGATTT
TATTCAGTAGAGACATTTTTATTATTGTTGGCATTAAAAGTTAGATACCCAGATAGAATT
ACATTGATTCGTGGTAACCATGAATCTAGACAAATCACTCAAGTCTATGGTTTCTATGAA
GAATGCGTTAGAAAGTATGGTAGTGTTACAGTTTGGAAATATTGTACAGAGATTTTCGAT
TATCTCTCACTTTCTGCTTTAGTTGATGGTAAAATATTTTGTGTTCATGGTGGTTTATCX
XXXXXXXXXATGGAAGGTTTTAAAAAAAAGTTTAATGGAACCTTTGTTACCGTTTGGTTT
GCTCCCAAANATTGTNAAAGATGTGGTAATGTTGCTGCAATTTTANAAATTGACGGAAAT
TTTAAAAAGAAATTTGCAATTTTTGAAGCTGTTCCTCAAGAATCAAGAGGTGCACCAGCT
AAAAAACCTGCACCTGAATANTTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAACAAATCAAAAATATATATATTNATATATAAAATATAAAAGAAAT
AATACAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
VTICGDIHGQFYDLKELFKVGGDCPQTNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRI
TLIRGNHESRQITQVYGFYEECVRKYGSVTVWKYCTEIFDYLSLSALVDGKIFCVHGGL-
--

---WKVLKKSLMEPLLPFGLLPXIVKDVVMLLQFXKLTEILKRNLQFLKLFLKNQEVHQL
KNLHLNXFYKKKKKKKKKKKKKKRKQIKNIYIXI*nikeiiqk
Translated Amino Acid sequence (All Frames) 
Frame A:
VTICGDIHGQFYDLKELFKVGGDCPQTNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRI
TLIRGNHESRQITQVYGFYEECVRKYGSVTVWKYCTEIFDYLSLSALVDGKIFCVHGGL-
--

---megfkkkfngtfvtvwfapkxcxrcgnvaailxidgnfkkkfaifeavpqesrgapa
kkpapexfl*kkkkkkkkkkkkkkktnqkyiyxyikykrnntk

Frame B:
*lfvvifmvnsmi*knflkleeivhkpiiflweil*iedfiq*rhfyycwh*kldtqiel
h*fvvtmnldkslksmvsmknalesmvvlqfgnivqrfsiishfll*lmvkyfvfmvvy-
--

---WKVLKKSLMEPLLPFGLLPXIVKDVVMLLQFXKLTEILKRNLQFLKLFLKNQEVHQL
KNLHLNXFYKKKKKKKKKKKKKKRKQIKNIYIXI*nikeiiqk

Frame C:
nylw*yswsil*fkrtf*swrrlstnqlsfygrfcr*rilfsrdifiivgiks*ipr*ny
idsw*p*i*tnhsslwfl*rmr*kvw*cysleilyrdfrlsltfcfs*w*nilcswwfi-
--

---grf*kkv*wnlcyrlvcsqxlxkmw*cccnfxn*rkf*keicnf*scssrikrcts*
ktct*ixfikkkkkkkkkkkkkkenkskiyixiyki*kk*yk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB632 (SSB632Q) /CSM/SS/SSB6-B/SSB632Q.Seq.d/                        995   0.0
SFG446 (SFG446Q) /CSM/SF/SFG4-B/SFG446Q.Seq.d/                        690   0.0
VFA846 (VFA846Q) /CSM/VF/VFA8-B/VFA846Q.Seq.d/                        603   e-171
SFB141 (SFB141Q) /CSM/SF/SFB1-B/SFB141Q.Seq.d/                        547   e-155
VFJ734 (VFJ734Q) /CSM/VF/VFJ7-B/VFJ734Q.Seq.d/                        541   e-153
VFO716 (VFO716Q) /CSM/VF/VFO7-A/VFO716Q.Seq.d/                        537   e-152
VFL191 (VFL191Q) /CSM/VF/VFL1-D/VFL191Q.Seq.d/                        509   e-143
SFF476 (SFF476Q) /CSM/SF/SFF4-D/SFF476Q.Seq.d/                        480   e-134
AFH141 (AFH141Q) /CSM/AF/AFH1-B/AFH141Q.Seq.d/                        476   e-133
SSM349 (SSM349Q) /CSM/SS/SSM3-C/SSM349Q.Seq.d/                        361   9e-99
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF161253|AF161253.1 Dictyostelium discoideum protein phosphatase 4 catalytic subunit (pppC) mRNA, complete cds.   712  0.0  2
AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.   700  0.0  2
BI507201|BI507201.1 BB170030B20B04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170030B20B04 5', mRNA sequence.    88  4e-40  4
AF176121|AF176121.1 Dictyostelium discoideum protein phosphatase 6 catalytic subunit (pppD) mRNA, complete cds.    58  2e-36  6
AF138278|AF138278.1 Dictyostelium discoideum protein phosphatase 2A catalytic subunit mRNA, complete cds.    70  5e-28  4
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    58  7e-26  8
AK073644|AK073644.1 Oryza sativa (japonica cultivar-group) cDNA clone:J033052N08, full insert sequence.    62  2e-24  5
BP187526|BP187526.1 Dugesia japonica cDNA, clone: 00321_HN, expressed in the head.    94  1e-22  2
BP185501|BP185501.1 Dugesia japonica cDNA, clone: 03579_HH, expressed in the head.    94  1e-22  2
BP188474|BP188474.1 Dugesia japonica cDNA, clone: 02979_HH, expressed in the head.    70  2e-22  3
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P11084) RecName: Full=Serine/threonine-protein phosphatase 4 ca...   243   4e-63
(A6H772) RecName: Full=Serine/threonine-protein phosphatase 4 ca...   243   4e-63
AF005884_1(AF005884|pid:none) Fugu rubripes serine/threonine pho...   243   4e-63
(A9JRC7) RecName: Full=Serine/threonine-protein phosphatase 4 ca...   243   4e-63
(Q6IP91) RecName: Full=Serine/threonine-protein phosphatase 4 ca...   243   4e-63
(P48528) RecName: Full=Serine/threonine-protein phosphatase PP-X...   241   1e-62
S28173(S28173)phosphoprotein phosphatase (EC 3.1.3.16) X catalyt...   241   2e-62
BT078721_1(BT078721|pid:none) Lepeophtheirus salmonis clone lsal...   238   9e-62
(O76932) RecName: Full=Serine/threonine-protein phosphatase 4 ca...   237   2e-61
CP001328_646(CP001328|pid:none) Micromonas sp. RCC299 chromosome...   236   3e-61
protein update 2009. 6. 9
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.73  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for SSB632 is nuc
5' end seq. ID SSB632F
5' end seq. 
>SSB632F.Seq
GTAACTATTTGTGGTGATATTCATGGTCAATTCTATGATTTAAAAGAACTTTTTAAAGTT
GGAGGAGATTGTCCACAAACCAATTATCTTTTTATGGGAGATTTTGTAGATAGAGGATTT
TATTCAGTAGAGACATTTTTATTATTGTTGGCATTAAAAGTTAGATACCCAGATAGAATT
ACATTGATTCGTGGTAACCATGAATCTAGACAAATCACTCAAGTCTATGGTTTCTATGAA
GAATGCGTTAGAAAGTATGGTAGTGTTACAGTTTGGAAATATTGTACAGAGATTTTCGAT
TATCTCTCACTTTCTGCTTTAGTTGATGGTAAAATATTTTGTGTTCATGGTGGTTTATC-
---------
Length of 5' end seq. 359
3' end seq. ID SSB632Z
3' end seq. 
>SSB632Z.Seq
----------ATGGAAGGTTTTAAAAAAAAGTTTAATGGAACCTTTGTTACCGTTTGGTT
TGCTCCCAAANATTGTNAAAGATGTGGTAATGTTGCTGCAATTTTANAAATTGACGGAAA
TTTTAAAAAGAAATTTGCAATTTTTGAAGCTGTTCCTCAAGAATCAAGAGGTGCACCAGC
TAAAAAACCTGCACCTGAATANTTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAAACAAATCAAAAATATATATATTNATATATAAAATATAAAAGAAA
TAATACAAAAA
Length of 3' end seq. 301
Connected seq. ID SSB632P
Connected seq. 
>SSB632P.Seq
GTAACTATTTGTGGTGATATTCATGGTCAATTCTATGATTTAAAAGAACTTTTTAAAGTT
GGAGGAGATTGTCCACAAACCAATTATCTTTTTATGGGAGATTTTGTAGATAGAGGATTT
TATTCAGTAGAGACATTTTTATTATTGTTGGCATTAAAAGTTAGATACCCAGATAGAATT
ACATTGATTCGTGGTAACCATGAATCTAGACAAATCACTCAAGTCTATGGTTTCTATGAA
GAATGCGTTAGAAAGTATGGTAGTGTTACAGTTTGGAAATATTGTACAGAGATTTTCGAT
TATCTCTCACTTTCTGCTTTAGTTGATGGTAAAATATTTTGTGTTCATGGTGGTTTATC-
---------ATGGAAGGTTTTAAAAAAAAGTTTAATGGAACCTTTGTTACCGTTTGGTTT
GCTCCCAAANATTGTNAAAGATGTGGTAATGTTGCTGCAATTTTANAAATTGACGGAAAT
TTTAAAAAGAAATTTGCAATTTTTGAAGCTGTTCCTCAAGAATCAAGAGGTGCACCAGCT
AAAAAACCTGCACCTGAATANTTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAACAAATCAAAAATATATATATTNATATATAAAATATAAAAGAAAT
AATACAAAAA
Length of connected seq. 660
Full length Seq ID -
Full length Seq. -
Length of full length seq. -