SSB618
Library SS
(Link to library)
Clone ID SSB618
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12249-1
Original site URL
Representative seq. ID SSB618Z
(Link to Original site)
Representative DNA sequence
>SSB618 (SSB618Q) /CSM/SS/SSB6-A/SSB618Q.Seq.d/
XXXXXXXXXXACTCACAATTGATGTCAATGGTGAAGAATATGAAATCAGCAGAAAAAGAT
TAAATGGTTTGTCAAANTACATCAAAAGTGTTTACTTAACTGGAGATTTGCTTGAACCTC
AAGATCACATTTTTGGTAAAATCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAGAAAT
ACTATATGTTTATGAAACGTATTAGTGAATTACTTGACAACTAAAATNAACAAGATGTTC
CAAACTCAAATCATTCAAAAAAAAAAAAAAACAAATTATCTAAAAAAGGTTTTTTAATAT
AAAACTAAGTTGTTTAACCCAAATTGGTTTTATTTACAAGTGAAATTAAAAAAATTTCCA
CTACATAAGTTAAATATAATTTTTATGTTNATTTATTTTAAAATAAAATAAAATAAAACA
AAATAGAAATCTAAATGATTTTTATTTTTTTAATTGGTGCTTTGAATAAAAT
sequence update 1997.12.26
Translated Amino Acid sequence
---LTIDVNGEEYEISRKRLNGLSXYIKSVYLTGDLLEPQDHIFGKIHPSRTFQRTLKKY
YMFMKRISELLDN*nxqdvpnsnhskkkknklskkgfli*n*vv*pklvlftseikkist
t*vkynfyvxlf*nkik*nkiei*mififligalnk


Translated Amino Acid sequence (All Frames)
Frame A:
---LTIDVNGEEYEISRKRLNGLSXYIKSVYLTGDLLEPQDHIFGKIHPSRTFQRTLKKY
YMFMKRISELLDN*nxqdvpnsnhskkkknklskkgfli*n*vv*pklvlftseikkist
t*vkynfyvxlf*nkik*nkiei*mififligalnk


Frame B:
---sqlmsmvknmksaekd*mvcqxtskvft*leiclnlkitflvksiqvelfkel*rnt
icl*nvlvnylttkxnkmfqtqiiqkkkktnylkkvf*yktklfnpnwfylqvklkkfpl
hklniifmxiyfkik*nktk*ksk*flff*lvl*ik


Frame C:
---hn*cqw*ri*nqqkkikwfvkxhqkcllnwrfa*tsrshfw*npsk*nfsknfeeil
yvyety**it*qlkxtrcsklksfkkkkkqii*krffniklscltqigfiyk*n*knfhy
is*i*flcxfilk*nkikqnrnlndfyffnwcfe*n


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSB618 (SSB618Q) /CSM/SS/SSB6-A/SSB618Q.Seq.d/ 476 e-133
VSC830 (VSC830Q) /CSM/VS/VSC8-B/VSC830Q.Seq.d/ 468 e-131
SSM714 (SSM714Q) /CSM/SS/SSM7-A/SSM714Q.Seq.d/ 468 e-131
SSM290 (SSM290Q) /CSM/SS/SSM2-D/SSM290Q.Seq.d/ 468 e-131
SSL572 (SSL572Q) /CSM/SS/SSL5-C/SSL572Q.Seq.d/ 468 e-131
SSK841 (SSK841Q) /CSM/SS/SSK8-B/SSK841Q.Seq.d/ 468 e-131
SSK556 (SSK556Q) /CSM/SS/SSK5-C/SSK556Q.Seq.d/ 468 e-131
SSK444 (SSK444Q) /CSM/SS/SSK4-B/SSK444Q.Seq.d/ 468 e-131
SSK289 (SSK289Q) /CSM/SS/SSK2-D/SSK289Q.Seq.d/ 468 e-131
SSJ409 (SSJ409Q) /CSM/SS/SSJ4-A/SSJ409Q.Seq.d/ 468 e-131

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 468 e-166 3
BF687688|BF687688.1 602066722F1 NIH_MGC_57 Homo sapiens cDNA clone IMAGE:4065917 5', mRNA sequence. 40 0.067 2
AC145374|AC145374.1 Mus musculus chromosome UNK clone RP24-178A11, *** SEQUENCING IN PROGRESS ***, 49 unordered pieces. 44 1.5 1
AJ227093|AJ227093.1 Ciona intestinalis genomic fragment, clone 2B8. 44 1.5 1
AG123279|AG123279.1 Pan troglodytes DNA, clone: PTB-132O04.F. 44 1.5 1
AC126179|AC126179.8 Homo sapiens 12 BAC RP11-593H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 44 1.5 1
BM728003|BM728003.1 UI-E-EJ0-ait-f-09-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone UI-E-EJ0-ait-f-09-0-UI 5', mRNA sequence. 38 3.2 2
CB850517|CB850517.1 UI-CF-EN1-acv-h-21-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone UI-CF-EN1-acv-h-21-0-UI 3', mRNA sequence. 38 3.3 2
X55026|X55026.1 Podospora anserina complete mitochondrial genome. 36 3.6 4
CB240758|CB240758.1 UI-CF-FN0-afw-i-18-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone UI-CF-FN0-afw-i-18-0-UI 3', mRNA sequence. 38 3.8 2
dna update 2003. 7.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86I43) RecName: Full=Uncharacterized protein DDB_G0275161; &A... 139 3e-32

protein update 2009. 6. 9
PSORT

psg: 0.75 gvh: 0.33 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SSB618 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB618Z
3' end seq.
>SSB618Z.Seq
----------ACTCACAATTGATGTCAATGGTGAAGAATATGAAATCAGCAGAAAAAGAT
TAAATGGTTTGTCAAANTACATCAAAAGTGTTTACTTAACTGGAGATTTGCTTGAACCTC
AAGATCACATTTTTGGTAAAATCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAGAAAT
ACTATATGTTTATGAAACGTATTAGTGAATTACTTGACAACTAAAATNAACAAGATGTTC
CAAACTCAAATCATTCAAAAAAAAAAAAAAACAAATTATCTAAAAAAGGTTTTTTAATAT
AAAACTAAGTTGTTTAACCCAAATTGGTTTTATTTACAAGTGAAATTAAAAAAATTTCCA
CTACATAAGTTAAATATAATTTTTATGTTNATTTATTTTAAAATAAAATAAAATAAAACA
AAATAGAAATCTAAATGATTTTTATTTTTTTAATTGGTGCTTTGAATAAAAT
Length of 3' end seq. 462
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -