>SSB580 (SSB580Q) /CSM/SS/SSB5-D/SSB580Q.Seq.d/
XXXXXXXXXXATTCCTATGCAATTTTTTTAAANGTATAAGCAGTTTTTAACAAAAAAAAA
TATTTTAAAAAAAAAAAAAAAGGAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAA
TTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGAA
AAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGT
TAAAGATGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATT
GCCACTATAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTT
GCTCTTTAGTTACTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAA
AAAAAAAAACAAA

---flcnffkxissf*qkkif*KKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRK
KKKKEKKNLKKKKKIEKKKLKM*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvc
slvtli*iyivifikkkkrkkkt

Frame A:
---flcnffkxissf*qkkif*KKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRK
KKKKEKKNLKKKKKIEKKKLKM*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvc
slvtli*iyivifikkkkrkkkt


Frame B:
---syaiflxv*avfnkkkyfkkkkkgkkkilkyff*nqf*i*iimffffl*kkerkkek
kkkkkkri*kkkkk*kkks*rcngktkvewkskkrsl*iatiinv*ilfrlcvcc*vqfa
l*ll*fksil*fl*kkkkekkkq


Frame C:
---pmqff*xykqfltkknilkkkkkekkky*niffkinfkyk**cffffykkkkekkkk
kkkrkkefkkkkknrkkkvkdvmvkpk*ngnpkkdlyklpl*smyrycsvcvyavrssll
fsyfnlnlycnfykkkkkkkknk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/                        285   3e-76
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/                        285   3e-76
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/                        285   3e-76
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/                        285   3e-76
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/                        285   3e-76
SSM515 (SSM515Q) /CSM/SS/SSM5-A/SSM515Q.Seq.d/                        285   3e-76
SSM501 (SSM501Q) /CSM/SS/SSM5-A/SSM501Q.Seq.d/                        285   3e-76
SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/                        285   3e-76
SSM425 (SSM425Q) /CSM/SS/SSM4-B/SSM425Q.Seq.d/                        285   3e-76
SSM383 (SSM383Q) /CSM/SS/SSM3-D/SSM383Q.Seq.d/                        285   3e-76

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   232  3e-99  4
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence.    56  4e-04  1
L06178|L06178.1 Apis mellifera ligustica complete mitochondrial genome.    38  0.004  6
BM094544|BM094544.1 saj17c12.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2832 5', mRNA sequence.    52  0.006  1
AX348899|AX348899.1 Sequence 357 from Patent WO0202807.           34  0.029  4
AX344490|AX344490.1 Sequence 337 from Patent WO0200926.           34  0.029  4
AB030651|AB030651.1 Felis catus mRNA for B-lymphocyte activation antigen B7-1 (CD80), complete cds.    38  0.055  2
L43882|L43882.1 Ixodes scapularis (isolate 2, strain Georgia 2) mitochondrial 12S ribosomal RNA (12S rDNA) gene fragment.    48  0.088  1
BH564896|BH564896.1 BOHIQ68TR BOHI Brassica oleracea genomic clone BOHIQ68, DNA sequence.    48  0.088  1
AE007544|AE007544.1 Clostridium acetobutylicum ATCC824 section 32 of 356 of the complete genome.    44  0.14  3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 269,174,436

 psg: 0.87  gvh: 0.22  alm: 0.41  top: 0.27  tms: 0.00  mit: 0.39  mip: 0.07
 nuc: 1.91  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSB580 is nuc

>SSB580Z.Seq
----------ATTCCTATGCAATTTTTTTAAANGTATAAGCAGTTTTTAACAAAAAAAAA
TATTTTAAAAAAAAAAAAAAAGGAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAA
TTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGAA
AAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGT
TAAAGATGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATT
GCCACTATAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTT
GCTCTTTAGTTACTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAA
AAAAAAAAACAAA