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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB575
Library SS
(Link to library)
Clone ID SSB575
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15363-1
Original site URL
Representative seq. ID SSB575Z
(Link to Original site)
Representative DNA sequence 
>SSB575 (SSB575Q) /CSM/SS/SSB5-D/SSB575Q.Seq.d/
XXXXXXXXXXAACCGATTTTNGTTTCCAATTTGCCGCCATCGGTGCCCTTCAAGAAGCCT
TTGAAGCTNACTTGGTTGGTTTATTNGAAGATACCAATTTATGTGCCATCCACGCTAAAC
GTGTTACTATCATGCCAAAAGATATTCACTTAGCCAGACGTATCAGAGGTGAAAGATCAT
AAAGAGTTTATTTTTATTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAACAAAACTATTC
AACTCATTTGTAAATTTTCATTAATATAATTCCATAAAAAAAAAAAGAAAAAAAAAAAAG
AAAAAAAAAATAAAGAA
sequence update 1998. 7. 7
Translated Amino Acid sequence 
---TDFXFQFAAIGALQEAFEAXLVGLXEDTNLCAIHAKRVTIMPKDIHLARRIRGERS*
rvyfyfltkkkkkkknktiqlickfsli*fhkkkkkkkkekknke
Translated Amino Acid sequence (All Frames) 
Frame A:
---TDFXFQFAAIGALQEAFEAXLVGLXEDTNLCAIHAKRVTIMPKDIHLARRIRGERS*
rvyfyfltkkkkkkknktiqlickfsli*fhkkkkkkkkekknke


Frame B:
---pixvsnlppsvpfkkplkltwlvyxkipiyvpstlnvllscqkift*pdvsevkdhk
efifif*qkkkkkkktklfnsfvnfh*ynsikkkrkkkkkkkik


Frame C:
---rfxfpicrhrcpsrsl*sxlgwfixryqfmchpr*tcyyhakryslsqtyqr*kiik
slflffnkkkkkkkkqnysthl*ifiniip*kkkekkkrkkk*r
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD716 (SSD716Q) /CSM/SS/SSD7-A/SSD716Q.Seq.d/                        369   e-101
SSB575 (SSB575Q) /CSM/SS/SSB5-D/SSB575Q.Seq.d/                        369   e-101
VSF896 (VSF896Q) /CSM/VS/VSF8-D/VSF896Q.Seq.d/                        345   2e-94
VSF191 (VSF191Q) /CSM/VS/VSF1-D/VSF191Q.Seq.d/                        345   2e-94
VSC276 (VSC276Q) /CSM/VS/VSC2-D/VSC276Q.Seq.d/                        345   2e-94
VSA813 (VSA813Q) /CSM/VS/VSA8-A/VSA813Q.Seq.d/                        345   2e-94
SSM830 (SSM830Q) /CSM/SS/SSM8-B/SSM830Q.Seq.d/                        345   2e-94
SSM623 (SSM623Q) /CSM/SS/SSM6-A/SSM623Q.Seq.d/                        345   2e-94
SSM431 (SSM431Q) /CSM/SS/SSM4-B/SSM431Q.Seq.d/                        345   2e-94
SSM324 (SSM324Q) /CSM/SS/SSM3-A/SSM324Q.Seq.d/                        345   2e-94
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U76664|U76664.1 Dictyostelium discoideum histone H3 (DdH3) mRNA, complete cds.   299  1e-77  1
CB832986|CB832986.1 USDA-FP_101014 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-14_E10 5', mRNA sequence.   103  1e-18  1
CB909978|CB909978.1 USDA-FP_101721 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-24_D09 5', mRNA sequence.   101  5e-18  1
AF378198|AF378198.1 Rhynchosciara americana histone H1 (rah1), histone H3 (rah3), histone H4 (rah4), histone H2A (rah2a), and histone H2B (rah2b) genes, complete cds.   101  5e-18  1
AY181029|AY181029.1 Plasmodium falciparum histone H3 gene, complete cds.    94  1e-17  2
BI815888|BI815888.1 PfESToaa33h04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:YB21_CAEEL Q10460 HYPOTHETICAL HISTONE 3-LIKE PROTEIN K03A1.1 IN CHROMOSOME X. [1] ;, mRNA sequence.    94  1e-17  2
AU086659|AU086659.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn3203.    94  2e-17  2
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          94  7e-17  4
AT003793|AT003793.1 Pyrocoelia rufa whole body cDNA, clone:PRB-37, similar to histone h3 mRNA, partial.    94  1e-15  1
AX536954|AX536954.1 Sequence 555 from Patent WO02064766.          76  2e-12  2
dna update 2003. 7.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021768_1(BC021768|pid:none) Mus musculus H3 histone, family 3B...    94   2e-18
(Q8WSF1) RecName: Full=Histone H3.3;  &AF323993_1(AF323993|pid:n...    94   2e-18
(Q27532) RecName: Full=Histone H3.3-like type 2;  &T26178(T26178...    94   2e-18
CR762083_1(CR762083|pid:none) Xenopus tropicalis finished cDNA, ...    94   2e-18
(P84243) RecName: Full=Histone H3.3;  &(P84245) RecName: Fu &(P8...    94   2e-18
AB098793_1(AB098793|pid:none) Bos taurus mRNA for similar to H3 ...    94   2e-18
(Q10453) RecName: Full=Histone H3.3 type 1;  &FB335644_1(FB33564...    94   2e-18
AK291102_1(AK291102|pid:none) Homo sapiens cDNA FLJ78487 complet...    94   2e-18
DQ217325_1(DQ217325|pid:none) Taeniopygia guttata clone 0065P001...    94   2e-18
AB098824_1(AB098824|pid:none) Bos taurus mRNA for similar to H3 ...    94   2e-18
protein update 2009. 6. 9
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSB575 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB575Z
3' end seq. 
>SSB575Z.Seq
----------AACCGATTTTNGTTTCCAATTTGCCGCCATCGGTGCCCTTCAAGAAGCCT
TTGAAGCTNACTTGGTTGGTTTATTNGAAGATACCAATTTATGTGCCATCCACGCTAAAC
GTGTTACTATCATGCCAAAAGATATTCACTTAGCCAGACGTATCAGAGGTGAAAGATCAT
AAAGAGTTTATTTTTATTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAACAAAACTATTC
AACTCATTTGTAAATTTTCATTAATATAATTCCATAAAAAAAAAAAGAAAAAAAAAAAAG
AAAAAAAAAATAAAGAA
Length of 3' end seq. 307
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -