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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB559
Library SS
(Link to library)
Clone ID SSB559
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04575-1
Original site URL
Representative seq. ID SSB559E
(Link to Original site)
Representative DNA sequence 
>SSB559 (SSB559Q) /CSM/SS/SSB5-C/SSB559Q.Seq.d/
ACAAAAAAAAAAGAAAAAAAGAAAACAAAGAAAACCTAATTTTTAAAAAAAAAAATGCAA
AAAATTATTTNAGTCATATGCTTAATTTNATCATTGGTATTTATTTCTTATGGAGAACAA
ACTTCGAGCGCAAAATGTTACATGAGACTCGATGATTGTGAAAAGATGAGAAAGGCTAGA
GAAAAATCAATTGCTGATGGATCAATTAATCATATGCCAGCTCAAGGACGTCAATTATTT
GAGGAAATCTATGCAAACAACTGTCCAAAAGCTTAATAAAAATTAAATTCAAAAGAAATA
AACTT
sequence update 1997.10. 6
Translated Amino Acid sequence 
tkkkekkktkkt*FLKKKMQKIIXVICLIXSLVFISYGEQTSSAKCYMRLDDCEKMRKAR
EKSIADGSINHMPAQGRQLFEEIYANNCPKA**klnskein
Translated Amino Acid sequence (All Frames) 
Frame A:
tkkkekkktkkt*FLKKKMQKIIXVICLIXSLVFISYGEQTSSAKCYMRLDDCEKMRKAR
EKSIADGSINHMPAQGRQLFEEIYANNCPKA**klnskein


Frame B:
qkkkkkrkqrkpnf*kkkckklfxsya*fxhwylflmenklraqnvt*dsmivkr*erle
knqllmdqliicqlkdvnylrksmqttvqklnkn*iqkk*t


Frame C:
kkkrkkenkenlifkkknaknyxshmlnxiigiyflwrtnferkmlhetr*l*kdekg*r
kinc*win*syassrtsii*gnlckqlskslikikfkrnkl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB559 (SSB559Q) /CSM/SS/SSB5-C/SSB559Q.Seq.d/                        484   e-136
SSH350 (SSH350Q) /CSM/SS/SSH3-C/SSH350Q.Seq.d/                        476   e-133
SSE488 (SSE488Q) /CSM/SS/SSE4-D/SSE488Q.Seq.d/                        476   e-133
SSC518 (SSC518Q) /CSM/SS/SSC5-A/SSC518Q.Seq.d/                        470   e-132
SSK836 (SSK836Q) /CSM/SS/SSK8-B/SSK836Q.Seq.d/                        468   e-131
SSJ838 (SSJ838Q) /CSM/SS/SSJ8-B/SSJ838Q.Seq.d/                        446   e-125
SSH823 (SSH823Q) /CSM/SS/SSH8-A/SSH823Q.Seq.d/                        256   2e-67
SHB778 (SHB778Q) /CSM/SH/SHB7-D/SHB778Q.Seq.d/                         62   5e-09
SHI146 (SHI146Q) /CSM/SH/SHI1-B/SHI146Q.Seq.d/                         40   0.019
SHH894 (SHH894Q) /CSM/SH/SHH8-D/SHH894Q.Seq.d/                         40   0.019
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL714007|AL714007.10 Mouse DNA sequence from clone RP23-295M3 on chromosome X.    44  0.95  1
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    42  0.99  4
U67557|U67557.1 Methanococcus jannaschii section 99 of 150 of the complete genome.    42  1.5  2
AC080097|AC080097.20 Homo sapiens 3 NOVECTOR RP11-784F16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38  1.7  3
AF452048|AF452048.1 Pyrocoelia rufa mitochondrion, complete genome.    38  2.0  2
AC123207|AC123207.3 Rattus norvegicus clone CH230-303O8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  2.4  3
AC023466|AC023466.2 Homo sapiens chromosome 7 clone RP11-661A23 map 7, LOW-PASS SEQUENCE SAMPLING.    40  2.9  3
AC090086|AC090086.1 Homo sapiens chromosome 8 clone CTD-3218L16 map 8, WORKING DRAFT SEQUENCE, 31 unordered pieces.    34  3.4  6
BX571714|BX571714.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-16L2.    42  3.7  1
BX324207|BX324207.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-11F7.    42  3.7  1
dna update 2003. 7.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 328,991,582
protein update 2009. 7. 6
PSORT 

 psg: 0.96  gvh: 0.63  alm: 0.24  top: 0.13  tms: 0.07  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for SSB559 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSB559E
Full length Seq. 
>SSB559E.Seq
ACAAAAAAAAAAGAAAAAAAGAAAACAAAGAAAACCTAATTTTTAAAAAAAAAAATGCAA
AAAATTATTTNAGTCATATGCTTAATTTNATCATTGGTATTTATTTCTTATGGAGAACAA
ACTTCGAGCGCAAAATGTTACATGAGACTCGATGATTGTGAAAAGATGAGAAAGGCTAGA
GAAAAATCAATTGCTGATGGATCAATTAATCATATGCCAGCTCAAGGACGTCAATTATTT
GAGGAAATCTATGCAAACAACTGTCCAAAAGCTTAATAAAAATTAAATTCAAAAGAAATA
AACTT
Length of full length seq. 305