>SSB550 (SSB550Q) /CSM/SS/SSB5-C/SSB550Q.Seq.d/
XXXXXXXXXXCCATTACTCATTCGTGAAGGTCATGGTGTTGAACCAGTAATTTACGCTCG
TTATGATNGGGGTAAAGAAGAAAAGAAAGTTGTTACTAATTTAACCGAACAAGAAGTTGA
AGAGAAATTAAAAGAATTATGTTTAATGGGTAGTAAATTCGATAAATCACCAGAAAGTGA
ATTTGATGAAGTTGATATNGTATCTGCTTATCAAAAACCAATTTTAAATTATAGACCAAT
TTTTTAGATAAAATCGAACGTGTCATATAATTAATAAATAATAATAACAATAATATAATA
ATAACAATAATAATAATAATAATAATAATTTTTCCATTTTTTTTTTTTATAAAATAGATT
TTTAAGAAAAGTAATAATTTAATTTATAAATAATAATAATAATGATAATAATAGTAATAG
TAAAACCAT

---LLIREGHGVEPVIYARYDXGKEEKKVVTNLTEQEVEEKLKELCLMGSKFDKSPESEF
DEVDXVSAYQKPILNYRPIF*iksnvsyn**iiitii***q*******ffhfffl*nrfl
rkvii*finnnnndnnsnskt

Frame A:
---hysfvkvmvlnq*ftlvmxgvkkkrkllli*pnkklkrn*knyv*wvvnsinhqkvn
lmklixylliknqf*iidqffr*nrtchiink***q*ynnnnnnnnnnnfsifffykidf
*ek**fnl*iiiimiiivivkp


Frame B:
---iths*rswc*tsnlrsl*xg*rrkescy*fnrtrs*reikrimfng**ir*itrk*i
**s*yxiclsktnfkl*tnfldkiervi*linnnnnniiitiiiiiiiifpffffik*if
kksnnliyk***********nh


Frame C:
---LLIREGHGVEPVIYARYDXGKEEKKVVTNLTEQEVEEKLKELCLMGSKFDKSPESEF
DEVDXVSAYQKPILNYRPIF*iksnvsyn**iiitii***q*******ffhfffl*nrfl
rkvii*finnnnndnnsnskt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK277 (VSK277Q) /CSM/VS/VSK2-D/VSK277Q.Seq.d/                        492   e-138
VSJ611 (VSJ611Q) /CSM/VS/VSJ6-A/VSJ611Q.Seq.d/                        492   e-138
SSM729 (SSM729Q) /CSM/SS/SSM7-B/SSM729Q.Seq.d/                        492   e-138
SSJ681 (SSJ681Q) /CSM/SS/SSJ6-D/SSJ681Q.Seq.d/                        492   e-138
SSB550 (SSB550Q) /CSM/SS/SSB5-C/SSB550Q.Seq.d/                        492   e-138
SSB385 (SSB385Q) /CSM/SS/SSB3-D/SSB385Q.Seq.d/                        478   e-134
SSM635 (SSM635Q) /CSM/SS/SSM6-B/SSM635Q.Seq.d/                        466   e-130
VSB476 (VSB476Q) /CSM/VS/VSB4-D/VSB476Q.Seq.d/                        260   2e-68
VSF690 (VSF690Q) /CSM/VS/VSF6-D/VSF690Q.Seq.d/                         38   0.11
CHQ296 (CHQ296Q) /CSM/CH/CHQ2-D/CHQ296Q.Seq.d/                         38   0.11

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   377  e-124  3
AC136664|AC136664.2 Rattus norvegicus clone CH230-229G9, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48  0.087  1
AC118099|AC118099.6 Rattus norvegicus clone CH230-132A20, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    48  0.087  1
BM774742|BM774742.1 ra97b02.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.4  1
AW571255|AW571255.1 ra16b04.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.4  1
AC021774|AC021774.3 Homo sapiens clone RP11-13C18, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44  1.4  1
AW570934|AW570934.1 ra13a02.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.4  1
BM880766|BM880766.1 rb18a09.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.4  1
AW570774|AW570774.1 ra10g11.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.4  1
AW571311|AW571311.1 ra16g10.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.4  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_90(AC116963|pid:none) Dictyostelium discoideum chromoso...   152   3e-36
AM270279_15(AM270279|pid:none) Aspergillus niger contig An12c023...    50   3e-05
BT071647_1(BT071647|pid:none) Picea sitchensis clone WS0294_D08 ...    47   2e-04
EU974953_1(EU974953|pid:none) Zea mays clone 461624 unknown mRNA.      47   2e-04
EU963095_1(EU963095|pid:none) Zea mays clone 257497 NADH-ubiquin...    47   2e-04
EU965985_1(EU965985|pid:none) Zea mays clone 290586 NADH-ubiquin...    45   6e-04
EF144500_1(EF144500|pid:none) Populus trichocarpa clone PX0019_N...    44   0.002
EF146609_1(EF146609|pid:none) Populus trichocarpa clone WS01210_...    44   0.002
(Q07842) RecName: Full=NADH-ubiquinone oxidoreductase 10.5 kDa s...    44   0.002
CR382129_116(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    43   0.004

 psg: 0.75  gvh: 0.30  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSB550 is nuc

>SSB550Z.Seq
----------CCATTACTCATTCGTGAAGGTCATGGTGTTGAACCAGTAATTTACGCTCG
TTATGATNGGGGTAAAGAAGAAAAGAAAGTTGTTACTAATTTAACCGAACAAGAAGTTGA
AGAGAAATTAAAAGAATTATGTTTAATGGGTAGTAAATTCGATAAATCACCAGAAAGTGA
ATTTGATGAAGTTGATATNGTATCTGCTTATCAAAAACCAATTTTAAATTATAGACCAAT
TTTTTAGATAAAATCGAACGTGTCATATAATTAATAAATAATAATAACAATAATATAATA
ATAACAATAATAATAATAATAATAATAATTTTTCCATTTTTTTTTTTTATAAAATAGATT
TTTAAGAAAAGTAATAATTTAATTTATAAATAATAATAATAATGATAATAATAGTAATAG
TAAAACCAT