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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB514
Library SS
(Link to library)
Clone ID SSB514
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12201-1
Original site URL
Representative seq. ID SSB514Z
(Link to Original site)
Representative DNA sequence 
>SSB514 (SSB514Q) /CSM/SS/SSB5-A/SSB514Q.Seq.d/
XXXXXXXXXXAGCATGTGGAGCTTTCCTTCCTGGTTGCTTTTATTGCCCATGGTCAAGCA
AATTAACAAGAGAAGTTACACCATCAGAACTTTAATGTTTTTTCAAATAATTTTTTGTTT
GTTTATTCATTTAAAAGTTGTTTTAATATCTTTTTTTCATTTGAACAAGAACAAACAAAA
AACCAAGATTTTTTATTAAAAAAAAAAAAAAAATAAAATAAAAAAAAAAATATATATTAA
TTTATAACTATAAAAAAA
sequence update 1997. 9.18
Translated Amino Acid sequence 
---MWSFPSWLLLLPMVKQINKRSYTIRTLMFFQIIFCLFIHLKVVLISFFHLNKNKQKT
KIFY*kkkknkikkkiyinl*l*k
Translated Amino Acid sequence (All Frames) 
Frame A:
---acgaflpgcfycpwsskltrevtpsel*cffk*ffvclfi*klf*ylffi*trtnkk
prffikkkkkik*kkkyiliynykk


Frame B:
---hvelsflvafiahgqan*qeklhhqnfnvfsnnflfvysfkscfniffsfeqeqtkn
qdfllkkkkk*nkkkniy*fitikk


Frame C:
---MWSFPSWLLLLPMVKQINKRSYTIRTLMFFQIIFCLFIHLKVVLISFFHLNKNKQKT
KIFY*kkkknkikkkiyinl*l*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM427 (SSM427Q) /CSM/SS/SSM4-B/SSM427Q.Seq.d/                        159   2e-38
SSM319 (SSM319Q) /CSM/SS/SSM3-A/SSM319Q.Seq.d/                        159   2e-38
SSK808 (SSK808Q) /CSM/SS/SSK8-A/SSK808Q.Seq.d/                        159   2e-38
SSK677 (SSK677Q) /CSM/SS/SSK6-D/SSK677Q.Seq.d/                        159   2e-38
SSK631 (SSK631Q) /CSM/SS/SSK6-B/SSK631Q.Seq.d/                        159   2e-38
SSJ846 (SSJ846Q) /CSM/SS/SSJ8-B/SSJ846Q.Seq.d/                        159   2e-38
SSJ276 (SSJ276Q) /CSM/SS/SSJ2-D/SSJ276Q.Seq.d/                        159   2e-38
SSJ130 (SSJ130Q) /CSM/SS/SSJ1-B/SSJ130Q.Seq.d/                        159   2e-38
SSI738 (SSI738Q) /CSM/SS/SSI7-B/SSI738Q.Seq.d/                        159   2e-38
SSI703 (SSI703Q) /CSM/SS/SSI7-A/SSI703Q.Seq.d/                        159   2e-38
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037133) Dictyostelium discoideum slug cDNA, clone SSB514.      159   4e-55  3
(C93995) Dictyostelium discoideum slug cDNA, clone SSK677.        159   1e-54  3
(C90543) Dictyostelium discoideum slug cDNA, clone SSI703.        159   1e-54  3
(C94442) Dictyostelium discoideum slug cDNA, clone SSK808.        159   2e-54  3
(C92716) Dictyostelium discoideum slug cDNA, clone SSF896.        159   2e-54  3
(AU037609) Dictyostelium discoideum slug cDNA, clone SSD849.      159   2e-54  3
(C91229) Dictyostelium discoideum slug cDNA, clone SSJ846.        159   2e-54  3
(AU038113) Dictyostelium discoideum slug cDNA, clone SSH286.      159   2e-54  3
(C92157) Dictyostelium discoideum slug cDNA, clone SSD158.        159   2e-54  3
(C93015) Dictyostelium discoideum slug cDNA, clone SSF477.        159   6e-54  3
dna update 2009. 7. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...    53   4e-06
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    42   0.009
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    39   0.043
protein update 2009. 1.27
PSORT 

 psg: 0.95  gvh: 0.55  alm: 0.20  top: 0.67  tms: 0.07  mit: 0.49  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.17  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSB514 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB514Z
3' end seq. 
>SSB514Z.Seq
----------AGCATGTGGAGCTTTCCTTCCTGGTTGCTTTTATTGCCCATGGTCAAGCA
AATTAACAAGAGAAGTTACACCATCAGAACTTTAATGTTTTTTCAAATAATTTTTTGTTT
GTTTATTCATTTAAAAGTTGTTTTAATATCTTTTTTTCATTTGAACAAGAACAAACAAAA
AACCAAGATTTTTTATTAAAAAAAAAAAAAAAATAAAATAAAAAAAAAAATATATATTAA
TTTATAACTATAAAAAAA
Length of 3' end seq. 248
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -