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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB459
Library SS
(Link to library)
Clone ID SSB459
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14704-1
Original site URL
Representative seq. ID SSB459P
(Link to Original site)
Representative DNA sequence 
>SSB459 (SSB459Q) /CSM/SS/SSB4-C/SSB459Q.Seq.d/
ATCAATTTCAAAGAAACCATTACTTTTACAAGAATCATTTAATCAAATTTCAAAACTTTT
ATCAATTTCTCAACATTTTGTATATGAAACTTTAATTTATTTCATTAAATTGAAATTAAA
GGAATTACCAAAAATAGTTTCAAATGAATGGAATAATAATAATAATAATAATAATAACCC
AAGTCAAAATAATGGCGGTGGTGGTGGCGGCGGTCTAAGTTACATATCACAAATTACTGA
TCATTTATTAACTATACCACAACAATTAGATCCATACTCTGAAGAAGAATTAACAAGATT
TTCATTATCAACATCATTACAATATCCAATTAAAACATGCTCGAATTCTGAAGATGATTT
TTATCAAAATCTTTTAATTCAATATCAAAGAGAAAAACAATTTGATGATGAACAATTATT
AATTGAAAAATTAAAAGAAAAACAAGAACAACAACAAGAACAACAAGAAAAAGAACAACA
ACAAGAAAAAGAACAACAAGATGCTGATCAAGATATTAATATTAATACAAATAATAATAA
TTGAAAATGATGAAAATGATGAAGATGATGAATTGGAAGATGGTATTGCTCATCAATGGA
TTACAATTGTAGCAAXXXXXXXXXXGTTGAAATTATNACATTAAATGACCATCATGCAAC
AACTTAGTAATGATATTGGTTATTTATTTAATGTATTATCTGCTTTAGGTGTTAGTGCTG
AACCTTTATTACAAAAAANTCAATCATTATTGAAATGAATCGTGATACTTTTACTTCATT
TTATCATCAAGAATTACATAATAATGATGANAATAATAATAATAATAATGGTAATAGTAA
TAATAATAATAATAATACAAATAATATATCTTTGCTAACAAATGCTGAAAAGAATATTTG
TAATTTAATTGGTAAAATGAGAAATATTAAATAAATAAATGTTTTTATTTTATTTTTATT
TTCTTTTTCTTAA
sequence update 2001. 3. 2
Translated Amino Acid sequence 
qfqrnhyfyknhlikfqnfyqflnilymkl*fisln*n*rnyqk*fqmngiiiiiiiitq
vkimavvvaav*vtyhklliiy*lyhnn*ihtlkkn*qdfhyqhhyniqlkharilkmif
ikif*fnikeknnlmmnny*lkn*KKNKNNNKNNKKKNNNKKKNNKMLIKILILIQIIII
ENDENDEDDELEDGIAHQWITIVA---

---VEIXTLNDHHATT***ywlfi*ciicfrc*c*tfitkxsiiiemnrdtftsfyhqel
hnndxnnnnnngnsnnnnnntnnislltnaeknicnligkmrnik*invfilflfsfs*
Translated Amino Acid sequence (All Frames) 
Frame A:
infketitftrii*snfktfinfstfci*nfnlfh*ieikgitknsfk*me********p
ksk*wrwwwrrsklhitny*sfinytttirsil*rrinkifiiniitisn*nmlef*r*f
lsksfnsiskrkti***tiin*kikrktrtttrttrkrtttrkrttrc*sry*y*yk***
lkmmkmmkmmnwkmvllinglql*q---

---VEIXTLNDHHATT***ywlfi*ciicfrc*c*tfitkxsiiiemnrdtftsfyhqel
hnndxnnnnnngnsnnnnnntnnislltnaeknicnligkmrnik*invfilflfsfs*

Frame B:
siskkplllqesfnqiskllsisqhfvyetliyfiklklkelpkivsnewnnnnnnnnnp
sqnnggggggglsyisqitdhlltipqqldpyseeeltrfslstslqypiktcsnseddf
yqnlliqyqrekqfddeqllieklkekqeqqqeqqekeqqqekeqqdadqdinintnnnn
*k**k**r**igrwycssmdyncs---

---lklxh*mtimqqlsndigylfnvlsalgvsaepllqkxqsllk*ivilllhfiikny
iimmxiiiiimviviiiiiiqiiylc*qmlkrifvi*lvk*eilnk*mflfyfyflfl

Frame C:
qfqrnhyfyknhlikfqnfyqflnilymkl*fisln*n*rnyqk*fqmngiiiiiiiitq
vkimavvvaav*vtyhklliiy*lyhnn*ihtlkkn*qdfhyqhhyniqlkharilkmif
ikif*fnikeknnlmmnny*lkn*KKNKNNNKNNKKKNNNKKKNNKMLIKILILIQIIII
ENDENDEDDELEDGIAHQWITIVA---

---*nyxik*pscnnlvmilviylmyyll*vlvlnlyykkxnhy*nes*yfyfilssrit
****x*****w********yk*yifankc*keyl*fnw*neky*inkcfyfififffl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB459 (SSB459Q) /CSM/SS/SSB4-C/SSB459Q.Seq.d/                        505   e-142
VHM418 (VHM418Q) /CSM/VH/VHM4-A/VHM418Q.Seq.d/                        329   5e-89
AHC157 (AHC157Q) /CSM/AH/AHC1-C/AHC157Q.Seq.d/                         58   3e-07
FC-AQ24 (FC-AQ24Q) /CSM/FC/FC-AQ/FC-AQ24Q.Seq.d/                       54   4e-06
SHL421 (SHL421Q) /CSM/SH/SHL4-A/SHL421Q.Seq.d/                         50   6e-05
SHK140 (SHK140Q) /CSM/SH/SHK1-B/SHK140Q.Seq.d/                         50   6e-05
SHG327 (SHG327Q) /CSM/SH/SHG3-B/SHG327Q.Seq.d/                         50   6e-05
SHE131 (SHE131Q) /CSM/SH/SHE1-B/SHE131Q.Seq.d/                         50   6e-05
SHC483 (SHC483Q) /CSM/SH/SHC4-D/SHC483Q.Seq.d/                         50   6e-05
CHK432 (CHK432Q) /CSM/CH/CHK4-B/CHK432Q.Seq.d/                         50   6e-05
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    48  1e-06  8
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    38  3e-06  10
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          44  3e-06  11
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    36  3e-06  8
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    44  2e-05  9
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42  2e-05  9
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    42  3e-05  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42  4e-05  9
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    50  1e-04  9
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    42  2e-04  9
dna update 2003. 7.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54LC8) RecName: Full=Conserved oligomeric Golgi complex subuni...   221   2e-56
protein update 2009. 1.26
PSORT 

 psg: 0.15  gvh: 0.32  alm: 0.31  top: -0.60  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: vacuolar

>> prediction for SSB459 is nuc
5' end seq. ID SSB459F
5' end seq. 
>SSB459F.Seq
ATCAATTTCAAAGAAACCATTACTTTTACAAGAATCATTTAATCAAATTTCAAAACTTTT
ATCAATTTCTCAACATTTTGTATATGAAACTTTAATTTATTTCATTAAATTGAAATTAAA
GGAATTACCAAAAATAGTTTCAAATGAATGGAATAATAATAATAATAATAATAATAACCC
AAGTCAAAATAATGGCGGTGGTGGTGGCGGCGGTCTAAGTTACATATCACAAATTACTGA
TCATTTATTAACTATACCACAACAATTAGATCCATACTCTGAAGAAGAATTAACAAGATT
TTCATTATCAACATCATTACAATATCCAATTAAAACATGCTCGAATTCTGAAGATGATTT
TTATCAAAATCTTTTAATTCAATATCAAAGAGAAAAACAATTTGATGATGAACAATTATT
AATTGAAAAATTAAAAGAAAAACAAGAACAACAACAAGAACAACAAGAAAAAGAACAACA
ACAAGAAAAAGAACAACAAGATGCTGATCAAGATATTAATATTAATACAAATAATAATAA
TTGAAAATGATGAAAATGATGAAGATGATGAATTGGAAGATGGTATTGCTCATCAATGGA
TTACAATTGTAGCAA----------
Length of 5' end seq. 615
3' end seq. ID SSB459Z
3' end seq. 
>SSB459Z.Seq
----------GTTGAAATTATNACATTAAATGACCATCATGCAACAACTTAGTAATGATA
TTGGTTATTTATTTAATGTATTATCTGCTTTAGGTGTTAGTGCTGAACCTTTATTACAAA
AAANTCAATCATTATTGAAATGAATCGTGATACTTTTACTTCATTTTATCATCAAGAATT
ACATAATAATGATGANAATAATAATAATAATAATGGTAATAGTAATAATAATAATAATAA
TACAAATAATATATCTTTGCTAACAAATGCTGAAAAGAATATTTGTAATTTAATTGGTAA
AATGAGAAATATTAAATAAATAAATGTTTTTATTTTATTTTTATTTTCTTTTTCTTAA
Length of 3' end seq. 348
Connected seq. ID SSB459P
Connected seq. 
>SSB459P.Seq
ATCAATTTCAAAGAAACCATTACTTTTACAAGAATCATTTAATCAAATTTCAAAACTTTT
ATCAATTTCTCAACATTTTGTATATGAAACTTTAATTTATTTCATTAAATTGAAATTAAA
GGAATTACCAAAAATAGTTTCAAATGAATGGAATAATAATAATAATAATAATAATAACCC
AAGTCAAAATAATGGCGGTGGTGGTGGCGGCGGTCTAAGTTACATATCACAAATTACTGA
TCATTTATTAACTATACCACAACAATTAGATCCATACTCTGAAGAAGAATTAACAAGATT
TTCATTATCAACATCATTACAATATCCAATTAAAACATGCTCGAATTCTGAAGATGATTT
TTATCAAAATCTTTTAATTCAATATCAAAGAGAAAAACAATTTGATGATGAACAATTATT
AATTGAAAAATTAAAAGAAAAACAAGAACAACAACAAGAACAACAAGAAAAAGAACAACA
ACAAGAAAAAGAACAACAAGATGCTGATCAAGATATTAATATTAATACAAATAATAATAA
TTGAAAATGATGAAAATGATGAAGATGATGAATTGGAAGATGGTATTGCTCATCAATGGA
TTACAATTGTAGCAA----------GTTGAAATTATNACATTAAATGACCATCATGCAAC
AACTTAGTAATGATATTGGTTATTTATTTAATGTATTATCTGCTTTAGGTGTTAGTGCTG
AACCTTTATTACAAAAAANTCAATCATTATTGAAATGAATCGTGATACTTTTACTTCATT
TTATCATCAAGAATTACATAATAATGATGANAATAATAATAATAATAATGGTAATAGTAA
TAATAATAATAATAATACAAATAATATATCTTTGCTAACAAATGCTGAAAAGAATATTTG
TAATTTAATTGGTAAAATGAGAAATATTAAATAAATAAATGTTTTTATTTTATTTTTATT
TTCTTTTTCTTAA
Length of connected seq. 963
Full length Seq ID -
Full length Seq. -
Length of full length seq. -