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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB387
Library SS
(Link to library)
Clone ID SSB387
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16048-1
Original site URL
Representative seq. ID SSB387Z
(Link to Original site)
Representative DNA sequence 
>SSB387 (SSB387Q) /CSM/SS/SSB3-D/SSB387Q.Seq.d/
XXXXXXXXXXTATGAACCAGCTTGTTTTTCTGGAGATTTAGATCATGGTGTACTTGCTGT
TGGTATGGGTACTGATAATGGTGGAGATTATTACATTGTTAAAAATAGTTGGGGACCATC
ATGGGGTTTAAATGGTTATATTCATATGGCNAGNAATAAAGATAACNATTGTGGGATNTC
AACAATGGCTTCATATCCTATTGCTTAACCATTTTTATATGTATAGATATATATATATAT
AAATACTTTTCAAACCTGTATAAATTTGGATATTCTTTATCTTTTTTTTTTCTTTTTTTT
TTTCTGTTTATTCTTTTTTAAAAAAAAAAAAAAAAAAAAACAAATTATAATTAAAATAAT
TTAAATAAATTTCTTATTCAATTTTCCTAAATTAAAAAAAAA
sequence update 1997. 8. 7
Translated Amino Acid sequence 
---EPACFSGDLDHGVLAVGMGTDNGGDYYIVKNSWGPSWGLNGYIHMAXNKDNXCGXST
MASYPIA*pflyv*iyiyintfqtcinldilylfffffffclfffkkkkkkkqiiikii*
inflfnfpklkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---mnqlvflei*imvylllvwvlimveiitllkivgdhhgv*mvifiwxxikitivgxq
qwlhilllnhfymyryiyi*ilfkpv*iwiffifffsfffsvysflkkkkkknkl*lk*f
k*isysifln*kk


Frame B:
---*tslffwrfrswctccwygy**wwrllhc*k*lgtimgfkwlysygxx*r*xlwdxn
ngfisycltificidiyiykyfsnlykfgyslsffflffflfilf*kkkkkktnyn*nnl
nkfliqfs*ikkk


Frame C:
---EPACFSGDLDHGVLAVGMGTDNGGDYYIVKNSWGPSWGLNGYIHMAXNKDNXCGXST
MASYPIA*pflyv*iyiyintfqtcinldilylfffffffclfffkkkkkkkqiiikii*
inflfnfpklkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB387 (SSB387Q) /CSM/SS/SSB3-D/SSB387Q.Seq.d/                        383   e-105
SSB522 (SSB522Q) /CSM/SS/SSB5-A/SSB522Q.Seq.d/                        353   1e-96
SSM529 (SSM529Q) /CSM/SS/SSM5-B/SSM529Q.Seq.d/                        351   5e-96
SSM180 (SSM180Q) /CSM/SS/SSM1-D/SSM180Q.Seq.d/                        351   5e-96
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/                        351   5e-96
SSK227 (SSK227Q) /CSM/SS/SSK2-B/SSK227Q.Seq.d/                        351   5e-96
SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/                        351   5e-96
SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/                        351   5e-96
SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/                        351   5e-96
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/                        351   5e-96
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU051876) Dictyostelium discoideum slug cDNA, clone SSB387.      383   e-123  3
(AU037138) Dictyostelium discoideum slug cDNA, clone SSB522.      353   e-110  3
(C92575) Dictyostelium discoideum slug cDNA, clone SSE785.        351   e-109  3
(AU037792) Dictyostelium discoideum slug cDNA, clone SSE302.      351   e-109  3
(C89820) Dictyostelium discoideum slug cDNA, clone SSG195.        351   e-109  3
(AU038946) Dictyostelium discoideum slug cDNA, clone SSM180.      351   e-109  3
(AU037963) Dictyostelium discoideum slug cDNA, clone SSH103.      351   e-109  3
(AU052475) Dictyostelium discoideum slug cDNA, clone SLD386.      351   e-109  3
(C93289) Dictyostelium discoideum slug cDNA, clone SSM529.        351   e-109  3
(C91420) Dictyostelium discoideum slug cDNA, clone SSK227.        351   e-109  3
dna update 2009. 7. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik...    99   6e-20
D82884_1(D82884|pid:none) Sitophilus zeamais mRNA for cysteine p...    98   8e-20
EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ...    98   1e-19
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste...    97   1e-19
EF070511_1(EF070511|pid:none) Maconellicoccus hirsutus clone WHM...    96   4e-19
BT080951_1(BT080951|pid:none) Caligus clemensi clone ccle-evs-50...    95   6e-19
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...    95   8e-19
EF670319_1(EF670319|pid:none) Artemia persimilis cathepsin L-1 (...    94   1e-18
AF147207_1(AF147207|pid:none) Artemia franciscana cathepsin L-li...    94   1e-18
AY795054_1(AY795054|pid:none) Artemia franciscana cathepsin L pr...    94   1e-18
protein update 2009. 6. 8
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSB387 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB387Z
3' end seq. 
>SSB387Z.Seq
----------TATGAACCAGCTTGTTTTTCTGGAGATTTAGATCATGGTGTACTTGCTGT
TGGTATGGGTACTGATAATGGTGGAGATTATTACATTGTTAAAAATAGTTGGGGACCATC
ATGGGGTTTAAATGGTTATATTCATATGGCNAGNAATAAAGATAACNATTGTGGGATNTC
AACAATGGCTTCATATCCTATTGCTTAACCATTTTTATATGTATAGATATATATATATAT
AAATACTTTTCAAACCTGTATAAATTTGGATATTCTTTATCTTTTTTTTTTCTTTTTTTT
TTTCTGTTTATTCTTTTTTAAAAAAAAAAAAAAAAAAAAACAAATTATAATTAAAATAAT
TTAAATAAATTTCTTATTCAATTTTCCTAAATTAAAAAAAAA
Length of 3' end seq. 392
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -