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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB383
Library SS
(Link to library)
Clone ID SSB383
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04549-1
Original site URL
Representative seq. ID SSB383P
(Link to Original site)
Representative DNA sequence 
>SSB383 (SSB383Q) /CSM/SS/SSB3-D/SSB383Q.Seq.d/
GTTTCATTCAAGATTATATTTTAAATTGTATTGGTTGTCTTTGGTTTGATAGAGCTGAAT
CAAAAGATAGATTATTAGTTGCACAACAAATTTCAAAACATATTGAAAATGAAAATAATG
ACCCATTATTAATTTTCCCAGAAGGTGTATGTGTTAATAATCAATATTGTGTTATGTTTA
AAAAAGGTGCATTTGAATTACCAAATGTTATTATCTATCCAGTTGCAATCAAATATAATA
CATTATTTGTTGATGCATTTTGGAATTCAAAGAAACAATCATTTATTAGACATATGTTTA
ATTTAATGACATCATGGGCATTTGTTTGTGATGTTTGGXXXXXXXXXXGATGTTTGGTAT
TTAGAACCACAAACAATTAGAGAAGGTGAAACAGCAACACAATTTGCTAATCGTGTTAAA
GCAATGATTGCAAAGAAAGCTGGTATCATAAATGTACCATGGGATGGTTATTTGAAATAC
TTTAAACCAGGTTCAAGATTTGCTGAACATAAACAAAAGATTTTTGCTTTTCGTTTTAAA
AAGAAATTTGAAGAACAATTAAATAATAGTAACAATAATATTAATAATAGTTTTGGTAGT
GATGAAAATGAAATTGAAAATGATGAACAAGATAATAATAATAATAATGAATCCTCAAAT
AGTAGTATCGAAAAAGATAATAATANTTTTTCAAGTATTAAACAAAGAAAATTGGCAACC
CCAAACGAANAACTAAAAAAAATAAATAAATAATATAAAAAAAAAA
sequence update 1999. 1.14
Translated Amino Acid sequence 
FIQDYILNCIGCLWFDRAESKDRLLVAQQISKHIENENNDPLLIFPEGVCVNNQYCVMFK
KGAFELPNVIIYPVAIKYNTLFVDAFWNSKKQSFIRHMFNLMTSWAFVCDVW---

---DVWYLEPQTIREGETATQFANRVKAMIAKKAGIINVPWDGYLKYFKPGSRFAEHKQK
IFAFRFKKKFEEQLNNSNNNINNSFGSDENEIENDEQDNNNNNESSNSSIEKDNNXFSSI
KQRKLATPNEXLKKINK*ykkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vsfkiif*ivlvvfglielnqkidy*lhnkfqnilkmkimthy*fsqkvyvliinivlcl
kkvhlnyqmllsiqlqsniihyllmhfgiqrnnhlldicli**hhghlfvmf---

---DVWYLEPQTIREGETATQFANRVKAMIAKKAGIINVPWDGYLKYFKPGSRFAEHKQK
IFAFRFKKKFEEQLNNSNNNINNSFGSDENEIENDEQDNNNNNESSNSSIEKDNNXFSSI
KQRKLATPNEXLKKINK*ykkk

Frame B:
fhsrlyfklywlslv**s*ikr*iiscttnfkty*k*k**piinfprrcmc**silcyv*
krci*itkcyylsscnqi*yiic*cilefketiiy*tyv*fndimgicl*cl---

---mfgi*nhkqlekvkqqhnllivlkq*lqrklvs*myhgmvi*ntlnqvqdllninkr
fllfvlkrnlknn*iivtiiliivlvvmkmklkmmnkiiiiimnpqivvskkiiixfqvl
nkenwqpqtxn*kk*innikkk

Frame C:
FIQDYILNCIGCLWFDRAESKDRLLVAQQISKHIENENNDPLLIFPEGVCVNNQYCVMFK
KGAFELPNVIIYPVAIKYNTLFVDAFWNSKKQSFIRHMFNLMTSWAFVCDVW---

---clvfrttnn*rr*nsntic*sc*sndckeswyhkctmgwlfeil*trfkic*t*tkd
fcfsf*kei*rtik***q*y***fw***k*n*k**tr******ilk**yrkr**xffky*
tkkignpkrxtkknk*ii*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB383 (SSB383Q) /CSM/SS/SSB3-D/SSB383Q.Seq.d/                       1191   0.0
VFE435 (VFE435Q) /CSM/VF/VFE4-B/VFE435Q.Seq.d/                        662   0.0
SSC607 (SSC607Q) /CSM/SS/SSC6-A/SSC607Q.Seq.d/                        551   e-156
VSA885 (VSA885Q) /CSM/VS/VSA8-D/VSA885Q.Seq.d/                        396   e-109
VHQ172 (VHQ172Q) /CSM/VH/VHQ1-C/VHQ172Q.Seq.d/                         56   8e-07
VHI774 (VHI774Q) /CSM/VH/VHI7-D/VHI774Q.Seq.d/                         56   8e-07
VHE577 (VHE577Q) /CSM/VH/VHE5-D/VHE577Q.Seq.d/                         56   8e-07
SSG130 (SSG130Q) /CSM/SS/SSG1-B/SSG130Q.Seq.d/                         56   8e-07
SSA348 (SSA348Q) /CSM/SS/SSA3-B/SSA348Q.Seq.d/                         56   8e-07
AHN423 (AHN423Q) /CSM/AH/AHN4-A/AHN423Q.Seq.d/                         56   8e-07
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ430933) Dictyostelium discoideum cDNA clone:ddv9f10, 3' e...   658   0.0    4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...   488   0.0    5
(C84247) Dictyostelium discoideum slug cDNA, clone SSB383.        496   e-167  2
(AU071391) Dictyostelium discoideum slug cDNA, clone SSB383.      476   e-130  1
(AU071833) Dictyostelium discoideum slug cDNA, clone SSC607.      468   e-127  1
(AU261810) Dictyostelium discoideum vegetative cDNA clone:VS...   333   e-118  2
(EL369290) CCES5350.b1_L18.ab1 CCE(LMS) endive Cichorium end...    48   4e-13  4
(GE602195) CCPX1042.b1_C22.ab1 CCP(UWX) Globe Artichoke Cyna...    42   6e-12  3
(GE591407) CCPW15371.b1_E03.ab1 CCP(UWX) Globe Artichoke Cyn...    42   6e-12  3
(BQ168571) WHE2459_D12_G23ZT Triticum monococcum early repro...    46   3e-11  5
dna update 2009. 7. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP004674_26(AP004674|pid:none) Oryza sativa Japonica Group genom...   157   5e-57
EF084942_1(EF084942|pid:none) Picea sitchensis clone WS0284_M01 ...   155   5e-56
AC159873_1(AC159873|pid:none) Medicago truncatula clone mth2-46p...   160   9e-56
AM486287_2(AM486287|pid:none) Vitis vinifera contig VV78X149941....   158   9e-56
EU391594_1(EU391594|pid:none) Ricinus communis putative lysophos...   157   3e-55
AK118869_1(AK118869|pid:none) Arabidopsis thaliana At5g60620 mRN...   154   3e-55
AB005246_4(AB005246|pid:none) Arabidopsis thaliana genomic DNA, ...   154   3e-55
CR954217_125(CR954217|pid:none) Ostreococcus tauri strain OTTH05...   139   7e-49
CP000596_128(CP000596|pid:none) Ostreococcus lucimarinus CCE9901...   140   2e-48
CP001326_527(CP001326|pid:none) Micromonas sp. RCC299 chromosome...   135   2e-44
protein update 2009. 6. 8
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSB383 is cyt
5' end seq. ID SSB383F
5' end seq. 
>SSB383F.Seq
GTTTCATTCAAGATTATATTTTAAATTGTATTGGTTGTCTTTGGTTTGATAGAGCTGAAT
CAAAAGATAGATTATTAGTTGCACAACAAATTTCAAAACATATTGAAAATGAAAATAATG
ACCCATTATTAATTTTCCCAGAAGGTGTATGTGTTAATAATCAATATTGTGTTATGTTTA
AAAAAGGTGCATTTGAATTACCAAATGTTATTATCTATCCAGTTGCAATCAAATATAATA
CATTATTTGTTGATGCATTTTGGAATTCAAAGAAACAATCATTTATTAGACATATGTTTA
ATTTAATGACATCATGGGCATTTGTTTGTGATGTTTGG----------
Length of 5' end seq. 338
3' end seq. ID SSB383Z
3' end seq. 
>SSB383Z.Seq
----------GATGTTTGGTATTTAGAACCACAAACAATTAGAGAAGGTGAAACAGCAAC
ACAATTTGCTAATCGTGTTAAAGCAATGATTGCAAAGAAAGCTGGTATCATAAATGTACC
ATGGGATGGTTATTTGAAATACTTTAAACCAGGTTCAAGATTTGCTGAACATAAACAAAA
GATTTTTGCTTTTCGTTTTAAAAAGAAATTTGAAGAACAATTAAATAATAGTAACAATAA
TATTAATAATAGTTTTGGTAGTGATGAAAATGAAATTGAAAATGATGAACAAGATAATAA
TAATAATAATGAATCCTCAAATAGTAGTATCGAAAAAGATAATAATANTTTTTCAAGTAT
TAAACAAAGAAAATTGGCAACCCCAAACGAANAACTAAAAAAAATAAATAAATAATATAA
AAAAAAAA
Length of 3' end seq. 418
Connected seq. ID SSB383P
Connected seq. 
>SSB383P.Seq
GTTTCATTCAAGATTATATTTTAAATTGTATTGGTTGTCTTTGGTTTGATAGAGCTGAAT
CAAAAGATAGATTATTAGTTGCACAACAAATTTCAAAACATATTGAAAATGAAAATAATG
ACCCATTATTAATTTTCCCAGAAGGTGTATGTGTTAATAATCAATATTGTGTTATGTTTA
AAAAAGGTGCATTTGAATTACCAAATGTTATTATCTATCCAGTTGCAATCAAATATAATA
CATTATTTGTTGATGCATTTTGGAATTCAAAGAAACAATCATTTATTAGACATATGTTTA
ATTTAATGACATCATGGGCATTTGTTTGTGATGTTTGG----------GATGTTTGGTAT
TTAGAACCACAAACAATTAGAGAAGGTGAAACAGCAACACAATTTGCTAATCGTGTTAAA
GCAATGATTGCAAAGAAAGCTGGTATCATAAATGTACCATGGGATGGTTATTTGAAATAC
TTTAAACCAGGTTCAAGATTTGCTGAACATAAACAAAAGATTTTTGCTTTTCGTTTTAAA
AAGAAATTTGAAGAACAATTAAATAATAGTAACAATAATATTAATAATAGTTTTGGTAGT
GATGAAAATGAAATTGAAAATGATGAACAAGATAATAATAATAATAATGAATCCTCAAAT
AGTAGTATCGAAAAAGATAATAATANTTTTTCAAGTATTAAACAAAGAAAATTGGCAACC
CCAAACGAANAACTAAAAAAAATAAATAAATAATATAAAAAAAAAA
Length of connected seq. 756
Full length Seq ID -
Full length Seq. -
Length of full length seq. -