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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB373
Library SS
(Link to library)
Clone ID SSB373
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04543-1
Original site URL
Representative seq. ID SSB373E
(Link to Original site)
Representative DNA sequence 
>SSB373 (SSB373Q) /CSM/SS/SSB3-D/SSB373Q.Seq.d/
TTTTTTTTTATTTTTATTTATTTTTATTTATTTTTATTTTTTAATTTGGTTTATTTTTAT
TTTTATTTTTTTTTCCTCCTTAATTCTATTAATAACTTTTTTTTATTTAAACTCATATTA
AAAAATCCCAATTAATAAAAAAATAATTTTTTCCTCATTAAAAATGTATAAAATTAATAT
TTATTTATTAATATTCACAATAATATTAGCTTCATTATTTGCAACATCAAAATCTTTAGT
TGTACAAAAAAATGTTGGTGAAATTGATAATAACCAATGCCAAATATGTGAATTATTAGT
AAAAGATATTATTGAAGGTNTTACAGCTAATCAATCAGTTGAAGTAATTGAACATGGATT
AAACTTAATTTGCGATCATATTCCATTGCATGTTAGAGTTTGCAAACAATTTGTTGATTC
AAATTTCCAAAAAATTGTTCAATTCATTGAAAACCATGATGACCCACAAGAAATTTGTGA
AAAATGTGGAGTATGTGGCTNTTNTGATGAATATAATAAAATTGATACCCGTTACTTTCC
ACAACATAATCAACACAAAAGACATTTGAAAAAACAAAATAGTATTAAAAATTAAGGGTT
TAAAATTTTTTNTTTTAATAAAATATAAATATATAATTTTATAACATTGAAAAAAAAAAA
AAAAAAAAANAA
sequence update 1999. 2.25
Translated Amino Acid sequence 
fflflfifiyfyfliwfifififfsslillitffylnsy*KIPINKKIIFSSLKMYKINI
YLLIFTIILASLFATSKSLVVQKNVGEIDNNQCQICELLVKDIIEGXTANQSVEVIEHGL
NLICDHIPLHVRVCKQFVDSNFQKIVQFIENHDDPQEICEKCGVCGXXDEYNKIDTRYFP
QHNQHKRHLKKQNSIKN*gfkifxfnki*iynfitlkkkkkkx
Translated Amino Acid sequence (All Frames) 
Frame A:
fffifiyfylflffnlvyfyfyfffllnsinnfflfklilknpn**knnffliknv*n*y
lfinihnnisfiicnikifsctkkcw*n***pmpnm*iiskryy*rxys*sis*sn*twi
klnlrsysiac*slqtic*fkfpkncsih*kp**ptrnl*kmwsmwlx**i**n*yplls
tt*stqktfektk*y*klrv*nfxf**nini*fyniekkkkkkx


Frame B:
fflflfifiyfyfliwfifififfsslillitffylnsy*KIPINKKIIFSSLKMYKINI
YLLIFTIILASLFATSKSLVVQKNVGEIDNNQCQICELLVKDIIEGXTANQSVEVIEHGL
NLICDHIPLHVRVCKQFVDSNFQKIVQFIENHDDPQEICEKCGVCGXXDEYNKIDTRYFP
QHNQHKRHLKKQNSIKN*gfkifxfnki*iynfitlkkkkkkx


Frame C:
ffyfylflfifif*fglflflfffpp*fy**lffi*thikksqlikk*ffph*kciklif
iy*ysq*y*lhylqhqnl*lykkmlvkliitnakyvny**killkvlqlinqlk*lnmd*
t*faiifhcmlefannlliqiskklfnslktmmthkkfvknveyvaxxmniiklipvtfh
niintkdi*knkivlkikglkffxlikykyiil*h*kkkkkkx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI611 (SSI611Q) /CSM/SS/SSI6-A/SSI611Q.Seq.d/                        926   0.0
SSB373 (SSB373Q) /CSM/SS/SSB3-D/SSB373Q.Seq.d/                        926   0.0
SSJ559 (SSJ559Q) /CSM/SS/SSJ5-C/SSJ559Q.Seq.d/                        854   0.0
SSE642 (SSE642Q) /CSM/SS/SSE6-B/SSE642Q.Seq.d/                        827   0.0
SSL807 (SSL807Q) /CSM/SS/SSL8-A/SSL807Q.Seq.d/                        785   0.0
VSE815 (VSE815Q) /CSM/VS/VSE8-A/VSE815Q.Seq.d/                         46   7e-04
FC-AC20 (FC-AC20Q) /CSM/FC/FC-AC/FC-AC20Q.Seq.d/                       44   0.003
SSE167 (SSE167Q) /CSM/SS/SSE1-C/SSE167Q.Seq.d/                         40   0.042
FC-BO02 (FC-BO02Q) /CSM/FC/FC-BO/FC-BO02Q.Seq.d/                       40   0.042
VSJ669 (VSJ669Q) /CSM/VS/VSJ6-C/VSJ669Q.Seq.d/                         38   0.17
own update 2004. 5.31
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB016728|AB016728.1 Dictyostelium discoideum sapA mRNA for saposin A, complete cds.   674  0.0  5
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    38  1e-05  9
AL360354|AL360354.1 Plasmodium vivax telomeric YAC clone, complete finished sequence.    42  6e-05  5
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34  1e-04  13
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    44  7e-04  12
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    34  0.001  9
AC009368|AC009368.8 Drosophila melanogaster 3L BAC RP98-4F7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    46  0.001  6
AL031746|AL031746.9 Plasmodium falciparum DNA from MAL1P3.        42  0.001  8
AC006278|AC006278.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  0.001  8
AF030694|AF030694.2 Plasmodium falciparum strain Dd2 heat shock protein 86 (HSP86), O1 (o1), O3 (o3), O2 (o2), CG8 (cg8), CG4 (cg4), CG3 (cg3), putative chloroquine resistance transporter (crt), CG9 (cg9), CG1 (cg1), CG6 (cg6), CG2 (cg2), and CG7 (cg7) genes, complete cds.    44  0.002  5
dna update 2003. 7.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ153187_1(DQ153187|pid:none) Ictalurus punctatus NK-lysin type ...    59   1e-07
DQ153190_1(DQ153190|pid:none) Ictalurus punctatus NK-lysin type ...    59   1e-07
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m...    52   1e-05
B89567(B89567)protein T08A9.7 [imported] - Caenorhabditis elegans      51   4e-05
U40417_4(U40417|pid:none) Caenorhabditis elegans cosmid T08A9, c...    51   4e-05
(P20097) RecName: Full=Saposin-C; AltName: Full=Co-beta-glucosid...    49   1e-04
U40417_8(U40417|pid:none) Caenorhabditis elegans cosmid T08A9, c...    49   1e-04
CR855698_1(CR855698|pid:none) Xenopus tropicalis finished cDNA, ...    49   1e-04
AB008449_1(AB008449|pid:none) Bombyx mori mRNA for BmP109, compl...    49   1e-04
FN357292_36(FN357292|pid:none) Schistosoma mansoni genome sequen...    49   2e-04
protein update 2009. 7. 6
PSORT 

 psg: 0.84  gvh: 0.64  alm: 0.23  top: 0.27  tms: 0.07  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.28  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: Golgi
	 12.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSB373 is end
5' end seq. ID SSB373F
5' end seq. 
>SSB373F.Seq
TTTTTTTTTATTTTTATTTATTTTTATTTATTTTTATTTTTTAATTTGGTTTATTTTTAT
TTTTATTTTTTTTTCCTCCTTAATTCTATTAATAACTTTTTTTTATTTAAACTCATATTA
AAAAATCCCAATTAATAAAAAAATAATTTTTTCCTCATTAAAAATGTATAAAATTAATAT
TTATTTATTAATATTCACAATAATATTAGCTTCATTATTTGCAACATCAAAATCTTTAGT
TGTACAAAAAAATGTTGGTGAAATTGATAATAACCAATGCCAAATATGTGAATTATTAGT
AAAAGATATTATTGAAGGTCTTACAGCTAATCAATCAGTTGAAGTAATTGAACATGGATT
AAACTTAATTTGCGATCATATTCCATTGCATGTTAGAGTTTGCAAACAATTTGTTGATTC
AAATTTCCAAAAAATTGTTCAATTCATTGAAAACCATGATGACCCACAAGAAATTTGTGA
AAAATGTGGAGTATGTGGCTCTTCTGATGAATATAATAAAATTGATACCCGTTACTTTCC
ACAACATAATCAACACANAAGACATTTGAAAAAACAAAATAGTATTAAAAATTAAGGGTT
TAAAATTTTTTCTTTTAATAAAATATAAATATATAATTTTATAACATTGNAAAAAAAAAA
AAAAAAAAAN
Length of 5' end seq. 670
3' end seq. ID SSB373Z
3' end seq. 
>SSB373Z.Seq
----------CCTCATTAAAAATGTATAAAATTAATATTTATTTATTAATATTCACAATA
ATATTAGCTTCATTATTTGCAACATCAAAATNTTTAGTTGTACAAAAAAATGTTGGTGAA
ATTGATAATAACCAATGCCAAATATGTGAATTATTAGTAAAAGATATTATTGAAGGTTTT
ACAGCTAATCAATCAGTTGAAGTAATTGAACATGGATTAAACTTAATTTGCGATCATATT
CCATTGCATGTTAGAGTTTGCAAACAATTTGTTGATTCAAATTTCCAAAAAATTGTTCAA
TTCATTGAAAACCATGATGACCCACAAGAAATTTGTGAAAAATGTGGAGTATGTGGNTTT
TTTGATGAATATAATAAAATTGATACCCGTTACTTTCCACAACATAATCAACACAAAAGA
CATTTGAAAAAACAAAATAGTATTAAAAATTAAGGGTTTAAAATTTTTTTTTTTAATAAA
ATATAAATATATAATTTTATAACATTGAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 520
Connected seq. ID SSB373P
Connected seq. 
>SSB373P.Seq
TTTTTTTTTATTTTTATTTATTTTTATTTATTTTTATTTTTTAATTTGGTTTATTTTTAT
TTTTATTTTTTTTTCCTCCTTAATTCTATTAATAACTTTTTTTTATTTAAACTCATATTA
AAAAATCCCAATTAATAAAAAAATAATTTTTTCCTCATTAAAAATGTATAAAATTAATAT
TTATTTATTAATATTCACAATAATATTAGCTTCATTATTTGCAACATCAAAATCTTTAGT
TGTACAAAAAAATGTTGGTGAAATTGATAATAACCAATGCCAAATATGTGAATTATTAGT
AAAAGATATTATTGAAGGTCTTACAGCTAATCAATCAGTTGAAGTAATTGAACATGGATT
AAACTTAATTTGCGATCATATTCCATTGCATGTTAGAGTTTGCAAACAATTTGTTGATTC
AAATTTCCAAAAAATTGTTCAATTCATTGAAAACCATGATGACCCACAAGAAATTTGTGA
AAAATGTGGAGTATGTGGCTCTTCTGATGAATATAATAAAATTGATACCCGTTACTTTCC
ACAACATAATCAACACANAAGACATTTGAAAAAACAAAATAGTATTAAAAATTAAGGGTT
TAAAATTTTTTCTTTTAATAAAATATAAATATATAATTTTATAACATTGNAAAAAAAAAA
AAAAAAAAA----------CCTCATTAAAAATGTATAAAATTAATATTTATTTATTAATA
TTCACAATAATATTAGCTTCATTATTTGCAACATCAAAATNTTTAGTTGTACAAAAAAAT
GTTGGTGAAATTGATAATAACCAATGCCAAATATGTGAATTATTAGTAAAAGATATTATT
GAAGGTTTTACAGCTAATCAATCAGTTGAAGTAATTGAACATGGATTAAACTTAATTTGC
GATCATATTCCATTGCATGTTAGAGTTTGCAAACAATTTGTTGATTCAAATTTCCAAAAA
ATTGTTCAATTCATTGAAAACCATGATGACCCACAAGAAATTTGTGAAAAATGTGGAGTA
TGTGGNTTTTTTGATGAATATAATAAAATTGATACCCGTTACTTTCCACAACATAATCAA
CACAAAAGACATTTGAAAAAACAAAATAGTATTAAAAATTAAGGGTTTAAAATTTTTTTT
TTTAATAAAATATAAATATATAATTTTATAACATTGAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1189
Full length Seq ID SSB373E
Full length Seq. 
>SSB373E.Seq
TTTTTTTTTATTTTTATTTATTTTTATTTATTTTTATTTTTTAATTTGGTTTATTTTTAT
TTTTATTTTTTTTTCCTCCTTAATTCTATTAATAACTTTTTTTTATTTAAACTCATATTA
AAAAATCCCAATTAATAAAAAAATAATTTTTTCCTCATTAAAAATGTATAAAATTAATAT
TTATTTATTAATATTCACAATAATATTAGCTTCATTATTTGCAACATCAAAATCTTTAGT
TGTACAAAAAAATGTTGGTGAAATTGATAATAACCAATGCCAAATATGTGAATTATTAGT
AAAAGATATTATTGAAGGTNTTACAGCTAATCAATCAGTTGAAGTAATTGAACATGGATT
AAACTTAATTTGCGATCATATTCCATTGCATGTTAGAGTTTGCAAACAATTTGTTGATTC
AAATTTCCAAAAAATTGTTCAATTCATTGAAAACCATGATGACCCACAAGAAATTTGTGA
AAAATGTGGAGTATGTGGCTNTTNTGATGAATATAATAAAATTGATACCCGTTACTTTCC
ACAACATAATCAACACAAAAGACATTTGAAAAAACAAAATAGTATTAAAAATTAAGGGTT
TAAAATTTTTTNTTTTAATAAAATATAAATATATAATTTTATAACATTGAAAAAAAAAAA
AAAAAAAAANAA
Length of full length seq. 672