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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFK740
Library AF
(Link to library)
Clone ID AFK740
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID AFK740F
(Link to Original site)
Representative DNA sequence 
>AFK740 (AFK740Q) /CSM/AF/AFK7-B/AFK740Q.Seq.d/
ATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAATCAAT
TTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
ifklnintikks*n*ickinl*qklvi*kkknqkk---


Frame B:
ysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Frame C:
iqikyqyn*kklklnl*nqfvtktsnlkkkkpkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH486 (SLH486Q) /CSM/SL/SLH4-D/SLH486Q.Seq.d/                        121   2e-27
SLG462 (SLG462Q) /CSM/SL/SLG4-C/SLG462Q.Seq.d/                        121   2e-27
SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/                        121   2e-27
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        121   2e-27
SHL201 (SHL201Q) /CSM/SH/SHL2-A/SHL201Q.Seq.d/                        121   2e-27
SHG423 (SHG423Q) /CSM/SH/SHG4-A/SHG423Q.Seq.d/                        121   2e-27
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/                        121   2e-27
SHD161 (SHD161Q) /CSM/SH/SHD1-C/SHD161Q.Seq.d/                        121   2e-27
SHC463 (SHC463Q) /CSM/SH/SHC4-C/SHC463Q.Seq.d/                        121   2e-27
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/                        121   2e-27
own update 2002.10.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   6e-21  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   1e-18  2
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80   8e-12  1
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    54   4e-04  1
BX322622|BX322622.10 Zebrafish DNA sequence from clone DKEYP-14D3 in linkage group 8.    36   0.023  5
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING.    46   0.11   1
BM424783|BM424783.1 IpSpn00680 Spleen cDNA library Ictalurus punctatus cDNA 5', mRNA sequence.    28   0.14   3
BX088532|BX088532.7 Zebrafish DNA sequence from clone CH211-127E17 in linkage group 8.    36   0.22   4
AF031860|AF031860.1 Rhipicephalus compositus 12S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence.    40   0.23   2
BX957329|BX957329.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-130P21.    32   0.28   5
dna update 2004. 8. 4
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 45,101,485
protein update 2009. 4.24
PSORT -
5' end seq. ID AFK740F
5' end seq. 
>AFK740F.Seq
ATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAATCAAT
TTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAA----------
Length of 5' end seq. 107
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -