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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB358
Library SS
(Link to library)
Clone ID SSB358
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12246-1
Original site URL
Representative seq. ID SSB358Z
(Link to Original site)
Representative DNA sequence 
>SSB358 (SSB358Q) /CSM/SS/SSB3-C/SSB358Q.Seq.d/
XXXXXXXXXXAAAGCACCACATGTACAAGGCGACCCAGAATTCGAGAGAATTGCACACGA
ATATCAAAATACCTCAGAAGCATTGGGTGCCATTATTCCAGCAAAATTTATGTTTTCATA
TTACATTTCACCAAAATGTTNATTGTTATTGGGTGGAACTTGGTTAGTAAGTAAAATGTT
AAACTGTTGTTCATACTGTTGCAAAAAGGAAAAAGAAAATGATTGTGCAAAAAATGTTCA
CACTTGCTTATCCCATATCTCATTCTTTGCATTATTGGGTGGTTCTGCATTTGGTATTGG
TTNATCTCTCTATAACAGATATAAATTATAAATATACAAATTCAATTCTTTTTTTTTTTT
TTAAAAAAAAAAAAAAAGTTATATAAAACAATAATAAAAATATTAATATTAAAATTTTAA
TCTTAAACTTAAAAAAAAAAAAA
sequence update 1997. 8. 5
Translated Amino Acid sequence 
---APHVQGDPEFERIAHEYQNTSEALGAIIPAKFMFSYYISPKCXLLLGGTWLVSKMLN
CCSYCCKKEKENDCAKNVHTCLSHISFFALLGGSAFGIGXSLYNRYKL*iykfnsffff*
kkkksyikq**ky*y*nfnlklkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---khhmykatqnsrelhtnikipqkhwvplfqqnlcfhitfhqnvxcywvelg**vkc*
tvvhtvakrkkkmivqkmftlaypishslhywvvlhlvlvxlsitdinykytnsilffff
kkkkkvi*nnnkninikililnlkkkk


Frame B:
---sttctrrprirenctriskylrsigchysskiyvfilhftkmxivigwnlvsk*nvk
llfillqkgkrk*lckkcshllipylilciigwfciwywxisl*qi*iiniqiqfffffl
kkkkklyktiikililkf*s*t*kkk


Frame C:
---APHVQGDPEFERIAHEYQNTSEALGAIIPAKFMFSYYISPKCXLLLGGTWLVSKMLN
CCSYCCKKEKENDCAKNVHTCLSHISFFALLGGSAFGIGXSLYNRYKL*iykfnsffff*
kkkksyikq**ky*y*nfnlklkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB358 (SSB358Q) /CSM/SS/SSB3-C/SSB358Q.Seq.d/                        373   e-102
SSI331 (SSI331Q) /CSM/SS/SSI3-B/SSI331Q.Seq.d/                        365   e-100
SSE351 (SSE351Q) /CSM/SS/SSE3-C/SSE351Q.Seq.d/                        365   e-100
SSD685 (SSD685Q) /CSM/SS/SSD6-D/SSD685Q.Seq.d/                        365   e-100
SSD151 (SSD151Q) /CSM/SS/SSD1-C/SSD151Q.Seq.d/                        365   e-100
SSA270 (SSA270Q) /CSM/SS/SSA2-C/SSA270Q.Seq.d/                        365   e-100
SSK645 (SSK645Q) /CSM/SS/SSK6-B/SSK645Q.Seq.d/                        359   2e-98
SSJ829 (SSJ829Q) /CSM/SS/SSJ8-B/SSJ829Q.Seq.d/                        359   2e-98
SSB544 (SSB544Q) /CSM/SS/SSB5-B/SSB544Q.Seq.d/                        337   8e-92
SSJ279 (SSJ279Q) /CSM/SS/SSJ2-D/SSJ279Q.Seq.d/                        327   8e-89
own update 2000. 8.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84233) Dictyostelium discoideum slug cDNA, clone SSB358.        375   e-159  2
(C92151) Dictyostelium discoideum slug cDNA, clone SSD151.        367   e-157  2
(AU037833) Dictyostelium discoideum slug cDNA, clone SSE351.      367   e-157  2
(AU037479) Dictyostelium discoideum slug cDNA, clone SSD685.      367   e-157  2
(C91216) Dictyostelium discoideum slug cDNA, clone SSJ829.        361   e-153  2
(C90895) Dictyostelium discoideum slug cDNA, clone SSJ279.        220   e-146  3
(AU037158) Dictyostelium discoideum slug cDNA, clone SSB544.      339   e-142  2
(C94268) Dictyostelium discoideum slug cDNA, clone SSK645.        289   e-131  2
(C90379) Dictyostelium discoideum slug cDNA, clone SSI330.        180   1e-59  2
(AU073773) Dictyostelium discoideum slug cDNA, clone SSI331.      200   3e-47  1
dna update 2009. 7. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001291_862(CP001291|pid:none) Cyanothece sp. PCC 7424, complet...    70   3e-11
CP000250_4660(CP000250|pid:none) Rhodopseudomonas palustris HaA2...    56   3e-07
BX572608_166(BX572608|pid:none) Rhodopseudomonas palustris CGA00...    55   6e-07
CP000283_4375(CP000283|pid:none) Rhodopseudomonas palustris BisB...    55   7e-07
BA000045_3057(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    53   3e-06
CP000633_938(CP000633|pid:none) Agrobacterium vitis S4 chromosom...    52   5e-06
CP000494_646(CP000494|pid:none) Bradyrhizobium sp. BTAi1, comple...    52   6e-06
(P73795) RecName: Full=Uncharacterized protein sll1147;  &BA0000...    46   4e-04
CP000301_77(CP000301|pid:none) Rhodopseudomonas palustris BisB18...    46   4e-04
CP000655_1644(CP000655|pid:none) Polynucleobacter necessarius su...    36   0.35
protein update 2009. 6. 8
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial

>> prediction for SSB358 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB358Z
3' end seq. 
>SSB358Z.Seq
----------AAAGCACCACATGTACAAGGCGACCCAGAATTCGAGAGAATTGCACACGA
ATATCAAAATACCTCAGAAGCATTGGGTGCCATTATTCCAGCAAAATTTATGTTTTCATA
TTACATTTCACCAAAATGTTNATTGTTATTGGGTGGAACTTGGTTAGTAAGTAAAATGTT
AAACTGTTGTTCATACTGTTGCAAAAAGGAAAAAGAAAATGATTGTGCAAAAAATGTTCA
CACTTGCTTATCCCATATCTCATTCTTTGCATTATTGGGTGGTTCTGCATTTGGTATTGG
TTNATCTCTCTATAACAGATATAAATTATAAATATACAAATTCAATTCTTTTTTTTTTTT
TTAAAAAAAAAAAAAAAGTTATATAAAACAATAATAAAAATATTAATATTAAAATTTTAA
TCTTAAACTTAAAAAAAAAAAAA
Length of 3' end seq. 433
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -