>SSB339 (SSB339Q) /CSM/SS/SSB3-B/SSB339Q.Seq.d/
XXXXXXXXXXTCAAGAAAGATTCAGAACTATCACTACAGCATACTATCGCGGTGCTATGG
GTATCCTATTGGTTTATGATGTCACTGATGAAAAATNTTTTGGTAGCATTAGAAATTGGA
TTAGAAATATCGAGCAACATGNTTCAGANTCAGTTAATAAAATGTTAATCGGTAATAAAT
GTGATATGACCGAAAAGAAAGTTGTTGATAGCTCAAGAGGTAAATCACTTGCAGACGAAT
ATGGTATTAAATTTTTAGAAACTTTTGCCAAAAACAGTGTAAATGTAGAGGAAGCCTTTA
TTGGTTTAGCAAAAGATATTAAAAAACGTATGATTGATACACCAAATGATCCTGATCATA
CCATATGCATTACTCCAAACAATAAGAAAAATACTTGTTGTTAAATTGGGGCCATTTTAA
TTTTCACATTATTAGATGAAAAAAAAAAAA

---QERFRTITTAYYRGAMGILLVYDVTDEKXFGSIRNWIRNIEQHXSXSVNKMLIGNKC
DMTEKKVVDSSRGKSLADEYGIKFLETFAKNSVNVEEAFIGLAKDIKKRMIDTPNDPDHT
ICITPNNKKNTCC*igailiftlldekkk

Frame A:
---QERFRTITTAYYRGAMGILLVYDVTDEKXFGSIRNWIRNIEQHXSXSVNKMLIGNKC
DMTEKKVVDSSRGKSLADEYGIKFLETFAKNSVNVEEAFIGLAKDIKKRMIDTPNDPDHT
ICITPNNKKNTCC*igailiftlldekkk


Frame B:
---kkdselslqhtiavlwvsywfmmslmknxlvaleigleissnmxqxqlikc*svinv
i*pkrklliaqevnhlqtnmvlnf*kllpktv*m*rkpllv*qkilknv*lihqmiliip
yallqtirkilvvklgpf*fshy*mkkkk


Frame C:
---rkiqnyhysilsrcygypigl*ch**kxfw*h*kld*kyratxfrxs**nvnr**m*
ydrkesc**lkr*itcrriwy*ifrnfcqkqckcrgslywfskry*ktyd*ytk*s*syh
mhyskq*ekylllnwghfnfhiir*kkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB339 (SSB339Q) /CSM/SS/SSB3-B/SSB339Q.Seq.d/                        831   0.0
SSI427 (SSI427Q) /CSM/SS/SSI4-B/SSI427Q.Seq.d/                        823   0.0
SSG645 (SSG645Q) /CSM/SS/SSG6-B/SSG645Q.Seq.d/                        823   0.0
SSB365 (SSB365Q) /CSM/SS/SSB3-C/SSB365Q.Seq.d/                        823   0.0
SSA481 (SSA481Q) /CSM/SS/SSA4-D/SSA481Q.Seq.d/                        817   0.0
SSJ303 (SSJ303Q) /CSM/SS/SSJ3-A/SSJ303Q.Seq.d/                        724   0.0
VSJ608 (VSJ608Q) /CSM/VS/VSJ6-A/VSJ608Q.Seq.d/                        567   e-161
SSK334 (SSK334Q) /CSM/SS/SSK3-B/SSK334Q.Seq.d/                        567   e-161
SSH118 (SSH118Q) /CSM/SS/SSH1-A/SSH118Q.Seq.d/                        567   e-161
SSG832 (SSG832Q) /CSM/SS/SSG8-B/SSG832Q.Seq.d/                        567   e-161

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M34456|M34456.1 Dictyostelium discoideum GTP-binding protein SAS2 mRNA, complete cds.   823  0.0  1
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.   823  0.0  1
M34457|M34457.1 D.discoideum GTP-binding protein (SAS2) gene, complete cds.   567  e-169  3
BF517879|BF517879.1 NXSI_029_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_029_C02 5', mRNA sequence.    52  4e-10  2
AW869903|AW869903.1 NXNV_122_H04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone NXNV_122_H04 5', mRNA sequence.    52  4e-10  2
BQ699659|BQ699659.1 NXRV125_B07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV125_B07 5' similar to Arabidopsis thaliana sequence At3g46060 GTP-binding protein ara-3 see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence.    52  8e-08  2
BX250359|BX250359.1 Pinus pinaster xylem EST, clone PP035H11.     52  1e-07  2
BU893135|BU893135.1 P073G06 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence.    48  3e-07  2
CA825907|CA825907.1 R69E08 two-month-old roots from clone 'Beaupre' Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA 5', mRNA sequence.    48  4e-07  2
BU868265|BU868265.1 M113C12 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    48  4e-07  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P20791) RecName: Full=Ras-related protein Rab-8B; AltName: Full...   258   4e-68
(P20790) RecName: Full=Ras-related protein Rab-8A; AltName: Full...   216   3e-55
GN106033_1(GN106033|pid:none) Sequence 10814 from Patent WO20090...   167   1e-40
AC125368_16(AC125368|pid:none) Medicago truncatula clone mth2-13...   166   2e-40
GN106091_1(GN106091|pid:none) Sequence 10872 from Patent WO20090...   166   3e-40
GN106051_1(GN106051|pid:none) Sequence 10832 from Patent WO20090...   166   3e-40
AB079024_1(AB079024|pid:none) Nicotiana tabacum mRNA for ras-rel...   165   4e-40
GM977153_1(GM977153|pid:none) Sequence 61 from Patent WO20081456...   164   7e-40
GN106127_1(GN106127|pid:none) Sequence 10908 from Patent WO20090...   164   7e-40
GN106021_1(GN106021|pid:none) Sequence 10802 from Patent WO20090...   164   9e-40

 psg: 0.70  gvh: 0.36  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SSB339 is nuc

>SSB339Z.Seq
----------TCAAGAAAGATTCAGAACTATCACTACAGCATACTATCGCGGTGCTATGG
GTATCCTATTGGTTTATGATGTCACTGATGAAAAATNTTTTGGTAGCATTAGAAATTGGA
TTAGAAATATCGAGCAACATGNTTCAGANTCAGTTAATAAAATGTTAATCGGTAATAAAT
GTGATATGACCGAAAAGAAAGTTGTTGATAGCTCAAGAGGTAAATCACTTGCAGACGAAT
ATGGTATTAAATTTTTAGAAACTTTTGCCAAAAACAGTGTAAATGTAGAGGAAGCCTTTA
TTGGTTTAGCAAAAGATATTAAAAAACGTATGATTGATACACCAAATGATCCTGATCATA
CCATATGCATTACTCCAAACAATAAGAAAAATACTTGTTGTTAAATTGGGGCCATTTTAA
TTTTCACATTATTAGATGAAAAAAAAAAAA