>SSB335 (SSB335Q) /CSM/SS/SSB3-B/SSB335Q.Seq.d/
XXXXXXXXXXCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGG
ATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTAT
TAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTG
ATGATTCATNTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCAT
GGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATT
GTGGTATTGCATCAGTTAGCTCTTATCCACTAGCCTAGATTTATGGTTCCAAAATGAATA
GGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATA
AAAATAATAATTTCTAATTGT

---YTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSD
DSXDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnr
rmfgsi**pemffy*knknknnnf*l

Frame A:
---YTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSD
DSXDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnr
rmfgsi**pemffy*knknknnnf*l


Frame B:
---ihlvsimsqnvlqlnwimvf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplm
ihxivldqrqiiigslkihgvphgv*kvtf*cqrieriivvlhqlalih*prfmvpk*ig
ecldlssnlkcfsikkikikiiisnc


Frame C:
---yiwyll*akmfsn*igswcfscwlwcsr*r**rssikqktnhcypqe*r**s*il**
fx**c*tkgk*lldr*kfmgylmgykrlhfnvkg*ke*lwycis*llstsldlwfqne*e
nvwiylvt*nvfllkk*k*k**fli

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB335 (SSB335Q) /CSM/SS/SSB3-B/SSB335Q.Seq.d/                        777   0.0
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        769   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        769   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        769   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        769   0.0
SSK727 (SSK727Q) /CSM/SS/SSK7-B/SSK727Q.Seq.d/                        769   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        769   0.0
SSK481 (SSK481Q) /CSM/SS/SSK4-D/SSK481Q.Seq.d/                        769   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        769   0.0
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/                        769   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.   769  0.0  2
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   515  0.0  4
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.   234  1e-73  2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88  3e-25  3
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    76  1e-22  2
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88  2e-20  3
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82  6e-12  1
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds.    56  1e-08  2
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46  4e-07  3
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50  0.003  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   211   5e-54
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   106   2e-22
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   106   2e-22
AF358668_1(AF358668|pid:none) Oncorhynchus mykiss procathepsin L...   104   1e-21
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...   104   1e-21
BT081306_1(BT081306|pid:none) Caligus clemensi clone ccle-evs-50...   104   1e-21
U61296_1(U61296|pid:none) Oncorhynchus mykiss cathepsin L mRNA, ...   104   1e-21
BT074607_1(BT074607|pid:none) Osmerus mordax clone omor-rgc-519-...   103   2e-21
EF535003_1(EF535003|pid:none) Misgurnus mizolepis cathepsin L mR...   103   2e-21
FJ772427_1(FJ772427|pid:none) Lutjanus argentimaculatus cathepsi...   102   4e-21

 psg: 0.61  gvh: 0.40  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSB335 is cyt

>SSB335Z.Seq
----------CTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGG
ATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTAT
TAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTG
ATGATTCATNTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCAT
GGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATT
GTGGTATTGCATCAGTTAGCTCTTATCCACTAGCCTAGATTTATGGTTCCAAAATGAATA
GGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATA
AAAATAATAATTTCTAATTGT