>SSB325 (SSB325Q) /CSM/SS/SSB3-B/SSB325Q.Seq.d/
GAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGC
AAAAGGCAATTAACAAAATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATG
GAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTG
CTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCG
TAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAA
TAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAA
AATTTAAATAAATAAATAAATAAAAAATAATCTTTTAAAAATAAAAAAAAAAAAA

IISIKEIHGHKADVAAKKLQKAINKICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAIA
PLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflkk
fk*ink*kiif*k*kkk

Frame A:
elfq*krfmairlmllqrnckrqltksvtts*kamtlirmegshgmkyaig*iktiqmql
lhl*llkislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*lliniynfhf*k
nlnk*inkk*sfknkkkk


Frame B:
nyfnkrdswp*g*ccckeiakgn*qnl*qllerl*h**gwkdlmg*smqlgk*kqsrcnc
stydc*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*stfiififkk
i*ink*iknnllkikkkk


Frame C:
IISIKEIHGHKADVAAKKLQKAINKICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAIA
PLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflkk
fk*ink*kiif*k*kkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB325 (SSB325Q) /CSM/SS/SSB3-B/SSB325Q.Seq.d/                        634   0.0
SSM673 (SSM673Q) /CSM/SS/SSM6-D/SSM673Q.Seq.d/                        626   e-179
SSM465 (SSM465Q) /CSM/SS/SSM4-C/SSM465Q.Seq.d/                        626   e-179
SSM417 (SSM417Q) /CSM/SS/SSM4-A/SSM417Q.Seq.d/                        626   e-179
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                        626   e-179
SSM376 (SSM376Q) /CSM/SS/SSM3-D/SSM376Q.Seq.d/                        626   e-179
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                        626   e-179
SSM193 (SSM193Q) /CSM/SS/SSM1-D/SSM193Q.Seq.d/                        626   e-179
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/                        626   e-179
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                        626   e-179

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.   626  e-176  1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   626  e-176  1
AC114604|AC114604.3 Mus musculus clone RP23-367L9, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46  0.33  1
AC110201|AC110201.3 Mus musculus clone RP23-214G22, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44  1.3  1
BX546481|BX546481.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-60J4.    38  2.0  2
AC139135|AC139135.4 Mus musculus chromosome 9 clone RP24-360E17 map 9, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    46  2.1  2
BV069874|BV069874.1 S212P6388FG4.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    38  2.2  2
AC099550|AC099550.5 Homo sapiens BAC clone RP11-484O2 from 4, complete sequence.    44  2.2  5
CB821823|CB821823.1 EST 2674 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone be004b19 3', mRNA sequence.    38  2.6  2
AQ788482|AQ788482.1 HS_3130_A1_G09_T7C CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3130 Col=17 Row=M, genomic survey sequence.    40  3.3  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    44   0.001
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     44   0.001
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    44   0.002
BT084582_1(BT084582|pid:none) Zea mays full-length cDNA clone ZM...    40   0.020
(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    40   0.033
(Q54QU0) RecName: Full=Calcium-binding protein F-like; AltName: ...    40   0.033
AE017347_77(AE017347|pid:none) Cryptococcus neoformans var. neof...    38   0.097
AL844509_371(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.097
AM910994_159(AM910994|pid:none) Plasmodium knowlesi strain H chr...    38   0.097
AB154824_1(AB154824|pid:none) Mus musculus mRNA for RasGRP3, com...    37   0.17

 psg: 0.58  gvh: 0.16  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSB325 is nuc

>SSB325E.Seq
GAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGC
AAAAGGCAATTAACAAAATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATG
GAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTG
CTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCG
TAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAA
TAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAA
AATTTAAATAAATAAATAAATAAAAAATAATCTTTTAAAAATAAAAAAAAAAAAA