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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB306
Library SS
(Link to library)
Clone ID SSB306
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16580-1
Original site URL
Representative seq. ID SSB306Z
(Link to Original site)
Representative DNA sequence 
>SSB306 (SSB306Q) /CSM/SS/SSB3-A/SSB306Q.Seq.d/
XXXXXXXXXXGTATAAGCAGTTTTTAACAAAAAAAAATATTTTAAAAAAAAAAAAAAAGG
AAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTAAANATAAANAANAATGTT
TTTTTTTTTTTTATAAAAAAAAGAAAGNAAAAAAGNAAAAAAAAAAAAAAAGAAAAAAAG
AATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGTTAAAGATGTAATGGTAAAACCAA
AGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACTATAATCAATGTATAGAT
ATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAGTTACTTTAATTTAA
ATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAAAAAAAAAAACAAA
sequence update 1997. 8. 7
Translated Amino Acid sequence 
---issf*qkkif*KKKKRKKKNIKIFFLKSILXIXXNVFFFFIKKRKXKXKKKKKEKKN
LKKKKKIEKKKLKM*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*i
yivifikkkkrkkkt
Translated Amino Acid sequence (All Frames) 
Frame A:
---ykqfltkknilkkkkkekkky*niffkinfkxkxxcffffykkkkxkkxkkkkrkke
fkkkkknrkkkvkdvmvkpk*ngnpkkdlyklpl*smyrycsvcvyavrssllfsyfnln
lycnfykkkkkkkknk


Frame B:
---issf*qkkif*KKKKRKKKNIKIFFLKSILXIXXNVFFFFIKKRKXKXKKKKKEKKN
LKKKKKIEKKKLKM*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*i
yivifikkkkrkkkt


Frame C:
---*avfnkkkyfkkkkkgkkkilkyff*nqf*x*xxmffffl*kkexkkxkkkkkkkri
*kkkkk*kkks*rcngktkvewkskkrsl*iatiinv*ilfrlcvcc*vqfal*ll*fks
il*fl*kkkkekkkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/                        285   3e-76
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/                        285   3e-76
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/                        285   3e-76
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/                        285   3e-76
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/                        285   3e-76
SSM515 (SSM515Q) /CSM/SS/SSM5-A/SSM515Q.Seq.d/                        285   3e-76
SSM501 (SSM501Q) /CSM/SS/SSM5-A/SSM501Q.Seq.d/                        285   3e-76
SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/                        285   3e-76
SSM425 (SSM425Q) /CSM/SS/SSM4-B/SSM425Q.Seq.d/                        285   3e-76
SSM383 (SSM383Q) /CSM/SS/SSM3-D/SSM383Q.Seq.d/                        285   3e-76
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84210) Dictyostelium discoideum slug cDNA, clone SSB306.        232   3e-94  4
(AU037183) Dictyostelium discoideum slug cDNA, clone SSB580.      232   4e-94  4
(AU037429) Dictyostelium discoideum slug cDNA, clone SSD627.      226   5e-91  4
(C89753) Dictyostelium discoideum slug cDNA, clone SSG755.        232   3e-90  3
(AU039184) Dictyostelium discoideum slug cDNA, clone SSM491.      232   3e-90  3
(C94529) Dictyostelium discoideum slug cDNA, clone SSL167.        232   3e-90  3
(C94369) Dictyostelium discoideum slug cDNA, clone SSK893.        232   3e-90  3
(C90253) Dictyostelium discoideum slug cDNA, clone SSI471.        232   3e-90  3
(C94203) Dictyostelium discoideum slug cDNA, clone SSK535.        232   3e-90  3
(C92043) Dictyostelium discoideum slug cDNA, clone SSC111.        232   3e-90  3
dna update 2009. 7. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 260,418,025
protein update 2009. 6. 8
PSORT 

 psg: 0.87  gvh: 0.43  alm: 0.33  top: 0.27  tms: 0.00  mit: 0.35  mip: 0.07
 nuc: 1.33  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSB306 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB306Z
3' end seq. 
>SSB306Z.Seq
----------GTATAAGCAGTTTTTAACAAAAAAAAATATTTTAAAAAAAAAAAAAAAGG
AAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTAAANATAAANAANAATGTT
TTTTTTTTTTTTATAAAAAAAAGAAAGNAAAAAAGNAAAAAAAAAAAAAAAGAAAAAAAG
AATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGTTAAAGATGTAATGGTAAAACCAA
AGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACTATAATCAATGTATAGAT
ATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAGTTACTTTAATTTAA
ATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAAAAAAAAAAACAAA
Length of 3' end seq. 400
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -