>SSB291 (SSB291Q) /CSM/SS/SSB2-D/SSB291Q.Seq.d/
ATGATGTAATGATCTTGGATAATCAAAAACAAATTTTCGTTTGGGTTGGTAAAGAAAGTA
GTGATACTGAAAAATTAATGGCAAATGAAACTGCTCTCGAGTATATTATGAATGCTCCAA
CTCATAGAAGAGATGATCCAATCTTTACCATTCAAGATGGTTTTGAACCACATGAATTCA
CTTTTAATTTCCATGCTTGGCAAGTTAATAAAACTCAACAAGATTCTTATAAATCAAAAT
TAAGTGCTATCCTTGGTTCAAACAATAGTGGTCCAGCTTCTCCAATTATGTTACCTACTT
CTGGTGTTACTTTAAAACCAACAACAGCAGCTACTCCAAAACCAATAACTACACCAACAG
TAACTACTCCTAAACCAATAACTACACCGACAGTAGCTACTCTAAAAACAGTTACACCTG
CTGTAACTTTAAAGCCAACAACTGTAACTACTCCATCTAAAGTTGCTACCACTACAAATA
CCTCTACTCCATCACCAACTACAATTACAACATTCTATCCATTATCAGTTTTAAAACAAA
AAACTAATTTACCAAAXXXXXXXXXX

DVMILDNQKQIFVWVGKESSDTEKLMANETALEYIMNAPTHRRDDPIFTIQDGFEPHEFT
FNFHAWQVNKTQQDSYKSKLSAILGSNNSGPASPIMLPTSGVTLKPTTAATPKPITTPTV
TTPKPITTPTVATLKTVTPAVTLKPTTVTTPSKVATTTNTSTPSPTTITTFYPLSVLKQK
TNLP---

Frame A:
mm**swiiknkfsfglvkkvvilkn*wqmkllssil*mlqlieemiqslpfkmvlnhmns
llismlgkliklnkilinqn*vlslvqtivvqllqlcylllvll*nqqqqllqnq*lhqq
*lllnq*lhrq*ll*kqlhll*l*sqql*llhlkllplqipllhhqlqlqhsihyqf*nk
kliyq---


Frame B:
*cndlg*sktnfrlgw*rk**y*kingk*ncsrvyyecsns*kr*snlyhsrwf*tt*ih
f*fpclas**nstrfl*ikikcypwfkq*wssfsnyvtyfwcyfktnnssysktnnytns
nys*tnnytdssysknsytccnfkanncnysi*scyhykylysitnynynilsiisfktk
n*ft---


Frame C:
DVMILDNQKQIFVWVGKESSDTEKLMANETALEYIMNAPTHRRDDPIFTIQDGFEPHEFT
FNFHAWQVNKTQQDSYKSKLSAILGSNNSGPASPIMLPTSGVTLKPTTAATPKPITTPTV
TTPKPITTPTVATLKTVTPAVTLKPTTVTTPSKVATTTNTSTPSPTTITTFYPLSVLKQK
TNLP---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP894 (VHP894Q) /CSM/VH/VHP8-D/VHP894Q.Seq.d/                       1102   0.0
VHK614 (VHK614Q) /CSM/VH/VHK6-A/VHK614Q.Seq.d/                       1102   0.0
VHC852 (VHC852Q) /CSM/VH/VHC8-C/VHC852Q.Seq.d/                       1102   0.0
SSB291 (SSB291Q) /CSM/SS/SSB2-D/SSB291Q.Seq.d/                       1102   0.0
VHO706 (VHO706Q) /CSM/VH/VHO7-A/VHO706Q.Seq.d/                       1031   0.0
VHK838 (VHK838Q) /CSM/VH/VHK8-B/VHK838Q.Seq.d/                       1017   0.0
CHP366 (CHP366Q) /CSM/CH/CHP3-C/CHP366Q.Seq.d/                       1015   0.0
VHN221 (VHN221Q) /CSM/VH/VHN2-A/VHN221Q.Seq.d/                       1001   0.0
VHA678 (VHA678Q) /CSM/VH/VHA6-D/VHA678Q.Seq.d/                        995   0.0
VHL689 (VHL689Q) /CSM/VH/VHL6-D/VHL689Q.Seq.d/                        987   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X74387) D. discoideum (AX2, AX3) gene for protovillin.          1102   0.0    1
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...  1102   0.0    1
(BJ446497) Dictyostelium discoideum cDNA clone:ddv62l24, 3' ...  1102   0.0    1
(BJ443178) Dictyostelium discoideum cDNA clone:ddv52k04, 3' ...  1102   0.0    1
(BJ438172) Dictyostelium discoideum cDNA clone:ddv36h14, 3' ...  1102   0.0    1
(BJ445638) Dictyostelium discoideum cDNA clone:ddv60l01, 3' ...  1031   0.0    1
(BJ443264) Dictyostelium discoideum cDNA clone:ddv52l10, 3' ...  1017   0.0    1
(BJ383298) Dictyostelium discoideum cDNA clone:ddc52d17, 3' ...  1015   0.0    1
(BJ444672) Dictyostelium discoideum cDNA clone:ddv57i06, 3' ...  1001   0.0    1
(BJ437003) Dictyostelium discoideum cDNA clone:ddv32k20, 3' ...   995   0.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36418) RecName: Full=Protovillin; AltName: Full=100 kDa actin-...   210   2e-53
AY227447_1(AY227447|pid:none) Anableps anableps gelsolin mRNA, c...    71   2e-11
DQ465376_1(DQ465376|pid:none) Oreochromis mossambicus clone SSH ...    66   7e-10
AY825266_1(AY825266|pid:none) Meleagris gallopavo villin (VIL1) ...    64   2e-09
BC155581_1(BC155581|pid:none) Danio rerio scinderin like a, mRNA...    64   2e-09
BC125898_1(BC125898|pid:none) Danio rerio scinderin like a, mRNA...    64   2e-09
AK154851_1(AK154851|pid:none) Mus musculus NOD-derived CD11c +ve...    64   2e-09
AF175294_1(AF175294|pid:none) Danio rerio gelsolin mRNA, complet...    64   2e-09
AF099929_1(AF099929|pid:none) Rattus norvegicus pervin mRNA, com...    64   3e-09
BX927121_2(BX927121|pid:none) Zebrafish DNA sequence from clone ...    63   5e-09

 psg: 0.75  gvh: 0.24  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSB291 is nuc

>SSB291F.Seq
ATGATGTAATGATCTTGGATAATCAAAAACAAATTTTCGTTTGGGTTGGTAAAGAAAGTA
GTGATACTGAAAAATTAATGGCAAATGAAACTGCTCTCGAGTATATTATGAATGCTCCAA
CTCATAGAAGAGATGATCCAATCTTTACCATTCAAGATGGTTTTGAACCACATGAATTCA
CTTTTAATTTCCATGCTTGGCAAGTTAATAAAACTCAACAAGATTCTTATAAATCAAAAT
TAAGTGCTATCCTTGGTTCAAACAATAGTGGTCCAGCTTCTCCAATTATGTTACCTACTT
CTGGTGTTACTTTAAAACCAACAACAGCAGCTACTCCAAAACCAATAACTACACCAACAG
TAACTACTCCTAAACCAATAACTACACCGACAGTAGCTACTCTAAAAACAGTTACACCTG
CTGTAACTTTAAAGCCAACAACTGTAACTACTCCATCTAAAGTTGCTACCACTACAAATA
CCTCTACTCCATCACCAACTACAATTACAACATTCTATCCATTATCAGTTTTAAAACAAA
AAACTAATTTACCAAA----------