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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB287
Library SS
(Link to library)
Clone ID SSB287
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04524-1
Original site URL
Representative seq. ID SSB287Z
(Link to Original site)
Representative DNA sequence 
>SSB287 (SSB287Q) /CSM/SS/SSB2-D/SSB287Q.Seq.d/
XXXXXXXXXXTTTGATTGTTCTGGTGTATCTTGTCAAAAATTAAAATGTAAAGAAAATGA
AGTTCAATATAGATGGAGAGCAATGCCAATTAATTCTGATATGTGTTGTCCAGTTTGTAA
AATAAATTGTGATTTAGTTGAATGTACAGATGAAAAATGTGAAAATGGTACTTTCTCTAT
TATGACTGAATTAGGTTGTTGTTCAACTTGTGTAAATGATTGTTCAATATATGAATGTCC
ACCAATTCAATGCCCAAATGGTGCTCCAATTAAGAAATCAACTTCATGTTGCCCTGAATG
TCCTTAAAATTAAATTATGCAACCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
sequence update 1998. 5. 2
Translated Amino Acid sequence 
---DCSGVSCQKLKCKENEVQYRWRAMPINSDMCCPVCKINCDLVECTDEKCENGTFSIM
TELGCCSTCVNDCSIYECPPIQCPNGAPIKKSTSCCPECP*n*imqpikkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---livlvylvkn*nvkkmkfnidgeqcqlilicvvqfvk*ivi*lnvqmknvkmvlsll
*ln*vvvqlv*mivqymnvhqfnaqmvlqlrnqlhvalnvlkiklcnq*kkkkkkkkkk


Frame B:
---*lfwcilskikm*rk*ssi*mesnan*f*yvlssl*nkl*fs*myr*km*kwyflyy
d*irllfnlck*lfni*mstnsmpkwcsn*einfmlp*mslklnyatnkkkkkkkkkkk


Frame C:
---DCSGVSCQKLKCKENEVQYRWRAMPINSDMCCPVCKINCDLVECTDEKCENGTFSIM
TELGCCSTCVNDCSIYECPPIQCPNGAPIKKSTSCCPECP*n*imqpikkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL884 (SSL884Q) /CSM/SS/SSL8-D/SSL884Q.Seq.d/                        628   e-179
SSB287 (SSB287Q) /CSM/SS/SSB2-D/SSB287Q.Seq.d/                        628   e-179
VSC856 (VSC856Q) /CSM/VS/VSC8-C/VSC856Q.Seq.d/                         38   0.088
VSC859 (VSC859Q) /CSM/VS/VSC8-C/VSC859Q.Seq.d/                         34   1.4
SSM716 (SSM716Q) /CSM/SS/SSM7-A/SSM716Q.Seq.d/                         34   1.4
SSJ434 (SSJ434Q) /CSM/SS/SSJ4-B/SSJ434Q.Seq.d/                         34   1.4
CHR429 (CHR429Q) /CSM/CH/CHR4-B/CHR429Q.Seq.d/                         34   1.4
AFE624 (AFE624Q) /CSM/AF/AFE6-A/AFE624Q.Seq.d/                         34   1.4
AHC874 (AHC874Q) /CSM/AH/AHC8-D/AHC874Q.Seq.d/                         32   5.4
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...   628   e-176  1
(AU037079) Dictyostelium discoideum slug cDNA, clone SSB287.      628   e-176  1
(C93938) Dictyostelium discoideum slug cDNA, clone SSL884.        504   e-148  2
(EC824178) SME00004148 esmbsro2 Sawyeria marylandensis cDNA,...    36   0.003  3
(CZ931291) 249206 Tomato EcoRI BAC Library Solanum lycopersi...    38   0.005  2
(AC161974) Bos taurus clone CH240-105K9, WORKING DRAFT SEQUE...    50   0.058  1
(AC224241) Bos taurus clone CH240-445H10, WORKING DRAFT SEQU...    50   0.058  1
(DU129764) KBrH095I06R Brassica rapa BAC library KBrH Brassi...    50   0.058  1
(DU112570) KBrH094I06R Brassica rapa BAC library KBrH Brassi...    50   0.058  1
(BS000045) Pan troglodytes chromosome 22 clone:RP43-179P23, ...    36   0.38   3
dna update 2009. 7. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_29(AC116956|pid:none) Dictyostelium discoideum chromoso...   228   5e-59
AC116956_14(AC116956|pid:none) Dictyostelium discoideum chromoso...    53   4e-06
BX571800_1(BX571800|pid:none) Zebrafish DNA sequence from clone ...    51   1e-05
AE013599_3395(AE013599|pid:none) Drosophila melanogaster chromos...    44   0.001
U66246_1(U66246|pid:none) Canis familiaris von Willebrand factor...    44   0.001
EU000366_1(EU000366|pid:none) Drosophila melanogaster clone RE17...    44   0.001
(Q8CIZ8) RecName: Full=von Willebrand factor;          Short=vWF...    44   0.002
(Q6ZWJ8) RecName: Full=Cysteine-rich motor neuron 2 protein;    ...    43   0.003
DQ431033_1(DQ431033|pid:none) Saccoglossus kowalevskii crossvein...    43   0.004
(P04275) RecName: Full=von Willebrand factor;          Short=vWF...    42   0.007
protein update 2009. 6. 8
PSORT 

 psg: 0.44  gvh: 0.27  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSB287 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB287Z
3' end seq. 
>SSB287Z.Seq
----------TTTGATTGTTCTGGTGTATCTTGTCAAAAATTAAAATGTAAAGAAAATGA
AGTTCAATATAGATGGAGAGCAATGCCAATTAATTCTGATATGTGTTGTCCAGTTTGTAA
AATAAATTGTGATTTAGTTGAATGTACAGATGAAAAATGTGAAAATGGTACTTTCTCTAT
TATGACTGAATTAGGTTGTTGTTCAACTTGTGTAAATGATTGTTCAATATATGAATGTCC
ACCAATTCAATGCCCAAATGGTGCTCCAATTAAGAAATCAACTTCATGTTGCCCTGAATG
TCCTTAAAATTAAATTATGCAACCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
Length of 3' end seq. 351
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -