NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB277
Library SS
(Link to library)
Clone ID SSB277
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1
Original site URL
Representative seq. ID SSB277P
(Link to Original site)
Representative DNA sequence 
>SSB277 (SSB277Q) /CSM/SS/SSB2-D/SSB277Q.Seq.d/
GTGGTCAATTGGTGTCATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTC
ATCTCAAAACTTATTATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGA
ATGGACTCATGTCTCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCC
AGATCAACGTCATACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTANTGATCA
ATCAATTGGGTCTGCTGCTGATCTXXXXXXXXXXTAATGNCCAAAGAAGAGGTGGTCAAT
CTTCAAATAATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATCAAAAAAAA
AAAAGTAATAATAATAAAAAAAAAAAAAAAAAAATCTAAAAATAAATTAATGTAAACAAT
AGTAACATCAAAATAAATGGTTAAAATAATAATAAAATAAATAATCAAAAAAAAAAAAAA
AAATAAAATAAAATAAAAAATAAAAAAAATAATTTTTAAAAAAAAA
sequence update 1999. 1.18
Translated Amino Acid sequence 
WSIGVITYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDP
DQRHTAKQCLDDLWLSGXDQSIGSAAD---

---MXKEEVVNLQIIKFNNNNNKKKKKNQKKKSNNNKKKKKKI*k*invnnsniking*n
nnkinnqkkkkk*nkiknkknnf*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
vvnwchylyfimwfptilcfisklii*knfnr*l*fprtrmdscl*tcqsfh*klncqrs
rstsycqtms**plalwx*sinwvcc*s---

---*xpkkrwsifk*lnliiiiikkkkkikkkkviiikkkkkksknklm*tivtsk*mvk
iiik*iikkkkknkik*kikkiifkkk

Frame B:
WSIGVITYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDP
DQRHTAKQCLDDLWLSGXDQSIGSAAD---

---nxqrrggqssnn*i******kkkkkskkkk****kkkkknlkin*ckq**hqnkwlk
***nk*skkkkkik*nkk*kk*flkk

Frame C:
gqlvslpifyyvvshhsmlhlktyylkkf*plimisqnqnglmslnmpklslet*lskiq
invilpnnvlmtfgslvxinqlgllli---

---MXKEEVVNLQIIKFNNNNNKKKKKNQKKKSNNNKKKKKKI*k*invnnsniking*n
nnkinnqkkkkk*nkiknkknnf*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB277 (SSB277Q) /CSM/SS/SSB2-D/SSB277Q.Seq.d/                        589   e-167
VFJ379 (VFJ379Q) /CSM/VF/VFJ3-D/VFJ379Q.Seq.d/                        509   e-143
VFG381 (VFG381Q) /CSM/VF/VFG3-D/VFG381Q.Seq.d/                        509   e-143
SSK695 (SSK695Q) /CSM/SS/SSK6-D/SSK695Q.Seq.d/                        509   e-143
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/                        509   e-143
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/                        509   e-143
SSH378 (SSH378Q) /CSM/SS/SSH3-D/SSH378Q.Seq.d/                        509   e-143
SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/                        509   e-143
SSA402 (SSA402Q) /CSM/SS/SSA4-A/SSA402Q.Seq.d/                        509   e-143
SLI715 (SLI715Q) /CSM/SL/SLI7-A/SLI715Q.Seq.d/                        509   e-143
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   509  e-163  2
M64176|M64176.1 D.discoideum myosin light chain kinase (MLCK) mRNA, complete cds.    78  4e-12  2
AC141742|AC141742.1 Apis mellifera clone CH224-58F7, WORKING DRAFT SEQUENCE, 40 unordered pieces.    56  4e-04  1
AC107511|AC107511.5 Rattus norvegicus clone CH230-99L18, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    52  0.007  1
AC124112|AC124112.2 Mus musculus clone RP24-349I24, WORKING DRAFT SEQUENCE, 6 unordered pieces.    52  0.007  1
BX088709|BX088709.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-15J21.    52  0.007  1
AC128565|AC128565.2 Rattus norvegicus clone CH230-406I10, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    52  0.007  1
BZ367160|BZ367160.1 id02g06.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone id02g06 5', DNA sequence.    52  0.007  1
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    42  0.008  3
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          38  0.012  4
dna update 2003. 7.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser...   185   2e-47
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...   102   7e-21
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m...   100   2e-20
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f...    99   8e-20
AK052401_1(AK052401|pid:none) Mus musculus 13 days embryo lung c...    98   1e-19
(Q8IU85) RecName: Full=Calcium/calmodulin-dependent protein kina...    98   1e-19
AY335686_1(AY335686|pid:none) Synthetic construct Homo sapiens C...    98   1e-19
(Q8BW96) RecName: Full=Calcium/calmodulin-dependent protein kina...    98   1e-19
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina...    97   3e-19
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina...    97   3e-19
protein update 2009. 6. 8
PSORT 

 psg: 0.93  gvh: 0.57  alm: 0.35  top: 0.20  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.56  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 16.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SSB277 is nuc
5' end seq. ID SSB277F
5' end seq. 
>SSB277F.Seq
GTGGTCAATTGGTGTCATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTC
ATCTCAAAACTTATTATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGA
ATGGACTCATGTCTCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCC
AGATCAACGTCATACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTANTGATCA
ATCAATTGGGTCTGCTGCTGATCT----------
Length of 5' end seq. 264
3' end seq. ID SSB277Z
3' end seq. 
>SSB277Z.Seq
----------TAATGNCCAAAGAAGAGGTGGTCAATCTTCAAATAATTAAATTTAATAAT
AATAATAATAAAAAAAAAAAAAAAAATCAAAAAAAAAAAAGTAATAATAATAAAAAAAAA
AAAAAAAAAATCTAAAAATAAATTAATGTAAACAATAGTAACATCAAAATAAATGGTTAA
AATAATAATAAAATAAATAATCAAAAAAAAAAAAAAAAATAAAATAAAATAAAAAATAAA
AAAAATAATTTTTAAAAAAAAA
Length of 3' end seq. 252
Connected seq. ID SSB277P
Connected seq. 
>SSB277P.Seq
GTGGTCAATTGGTGTCATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTC
ATCTCAAAACTTATTATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGA
ATGGACTCATGTCTCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCC
AGATCAACGTCATACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTANTGATCA
ATCAATTGGGTCTGCTGCTGATCT----------TAATGNCCAAAGAAGAGGTGGTCAAT
CTTCAAATAATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATCAAAAAAAA
AAAAGTAATAATAATAAAAAAAAAAAAAAAAAAATCTAAAAATAAATTAATGTAAACAAT
AGTAACATCAAAATAAATGGTTAAAATAATAATAAAATAAATAATCAAAAAAAAAAAAAA
AAATAAAATAAAATAAAAAATAAAAAAAATAATTTTTAAAAAAAAA
Length of connected seq. 516
Full length Seq ID -
Full length Seq. -
Length of full length seq. -