SSB261
Library SS
(Link to library)
Clone ID SSB261
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16048-1
Original site URL
Representative seq. ID SSB261Z
(Link to Original site)
Representative DNA sequence
>SSB261 (SSB261Q) /CSM/SS/SSB2-C/SSB261Q.Seq.d/
XXXXXXXXXXGATGAAAACGATTTACAAAATGCTTTACTTTTAAATCCAGTCTCAGTTGC
TATTGATGCTTCTCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCAGC
TTGTTCTTCTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAATGG
TGAAGNTTATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTATAT
TCATATGGCAAGAAATAAAGNTAACAATTGTGGAATCTCAACAATGGCTTCATATCCTAT
TGCTTAACCATTTTTATATGTATAGATATATATATATATAAATACTCTTCAAACCTGTAT
AAATTTGTATATTCTTTATCTTTTTTTTTTCTTTTTTTTTTTCTGTTTATTCTTTTTTAA
AAAAAAAAAAAAAAAAAAACAAATTATAATTAAAATAATTTAAATAAATTTCTTATTCAA
TTTTCCTAAATTAAAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence
---ENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGE
XYYIVKNSWGPSWGLNGYIHMARNKXNNCGISTMASYPIA*pflyv*iyiyintlqtcin
lyilylfffffffclfffkkkkkkkqiiikii*inflfnfpklk


Translated Amino Acid sequence (All Frames)
Frame A:
---mktiykmlyf*iqsqlllmlliivsnftlpvftmnqlvllki*imvylllvwvlimv
kxitllkivgdhhgv*mvifiwqeikxtivesqqwlhilllnhfymyryiyi*ilfkpv*
iciffifffsfffsvysflkkkkkknkl*lk*fk*isysifln*k


Frame B:
---*krftkcftfksslscy*cfs**fptlhcrcll*tslff*rfrswctccwygy**w*
xllhc*k*lgtimgfkwlysygkk*x*qlwnlnngfisycltificidiyiykyssnlyk
fvyslsffflffflfilf*kkkkkktnyn*nnlnkfliqfs*ikk


Frame C:
---ENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGE
XYYIVKNSWGPSWGLNGYIHMARNKXNNCGISTMASYPIA*pflyv*iyiyintlqtcin
lyilylfffffffclfffkkkkkkkqiiikii*inflfnfpklk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM529 (SSM529Q) /CSM/SS/SSM5-B/SSM529Q.Seq.d/ 591 e-168
SSM180 (SSM180Q) /CSM/SS/SSM1-D/SSM180Q.Seq.d/ 591 e-168
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/ 591 e-168
SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/ 591 e-168
SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/ 591 e-168
SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/ 591 e-168
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/ 591 e-168
SSE302 (SSE302Q) /CSM/SS/SSE3-A/SSE302Q.Seq.d/ 591 e-168
SSB261 (SSB261Q) /CSM/SS/SSB2-C/SSB261Q.Seq.d/ 591 e-168
SSA169 (SSA169Q) /CSM/SS/SSA1-C/SSA169Q.Seq.d/ 591 e-168

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 44 6e-07 3
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 58 1e-04 1
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 58 1e-04 1
AI067610|AI067610.1 EST209292 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCC16 5' end similar to cathepsin L, mRNA sequence. 34 3e-04 3
AI975022|AI975022.1 EST269616 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAA90 5' end similar to cathepsin L, mRNA sequence. 34 6e-04 3
AJ496197|AJ496197.1 Myzus persicae mRNA for putative cathepsin L (catL gene). 42 8e-04 3
AI975620|AI975620.1 EST270214 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAV16 5' end, mRNA sequence. 34 8e-04 3
AI977044|AI977044.1 EST271638 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAE72 5' end, mRNA sequence. 34 8e-04 3
AI977557|AI977557.1 EST272151 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAN82 5' end, mRNA sequence. 34 8e-04 3
AI977348|AI977348.1 EST271942 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAI24 5' end, mRNA sequence. 34 8e-04 3
dna update 2003. 7.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ... 152 4e-36
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste... 142 3e-33
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 138 6e-32
D82884_1(D82884|pid:none) Sitophilus zeamais mRNA for cysteine p... 137 1e-31
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys... 137 1e-31
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 136 2e-31
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 136 2e-31
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ... 136 2e-31
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ... 136 2e-31
AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik... 136 3e-31
protein update 2009. 6. 8
PSORT

psg: 0.75 gvh: 0.57 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for SSB261 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB261Z
3' end seq.
>SSB261Z.Seq
----------GATGAAAACGATTTACAAAATGCTTTACTTTTAAATCCAGTCTCAGTTGC
TATTGATGCTTCTCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCAGC
TTGTTCTTCTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAATGG
TGAAGNTTATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTATAT
TCATATGGCAAGAAATAAAGNTAACAATTGTGGAATCTCAACAATGGCTTCATATCCTAT
TGCTTAACCATTTTTATATGTATAGATATATATATATATAAATACTCTTCAAACCTGTAT
AAATTTGTATATTCTTTATCTTTTTTTTTTCTTTTTTTTTTTCTGTTTATTCTTTTTTAA
AAAAAAAAAAAAAAAAAAACAAATTATAATTAAAATAATTTAAATAAATTTCTTATTCAA
TTTTCCTAAATTAAAAAA
Length of 3' end seq. 488
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -